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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eb9:A (2.1) BS01 HBA 4.1.2.47 GO:0016829 ... P52705 11742123
    2 1eb9:B (2.1) BS01 HBA 4.1.2.47 GO:0016829 ... P52705 11742123
    3 1eb9:B (2.1) BS02 HBA 4.1.2.47 GO:0016829 ... P52705 11742123
    4 1k03:A (2.7) BS02 HBA 1.6.99.1 GO:0003959 ... Q02899 11668181 PDBbind: -logKd/Ki=6.00, Kd=1uM
    5 1oyb:A (2.0) BS02 HBA 1.6.99.1 GO:0003959 ... Q02899 7881908
    6 1z42:A (1.85) BS02 HBA 1.6.99.1 GO:0003959 ... P54550 15890652
    7 1z42:B (1.85) BS02 HBA 1.6.99.1 GO:0003959 ... P54550 15890652
    8 2gq9:A (1.7) BS02 HBA ? GO:0000166 ... Q8EEC8 16857682
    9 2gq9:A (1.7) BS03 HBA ? GO:0000166 ... Q8EEC8 16857682
    10 2vq5:A (2.09) BS01 HBA 4.2.1.78 GO:0006952 ... Q67A25 19004827
    11 2vq5:B (2.09) BS02 HBA 4.2.1.78 GO:0006952 ... Q67A25 19004827
    12 3atz:A (2.04) BS02 HBA ? GO:0000166 ... Q8I6L9 21840922
    13 3atz:B (2.04) BS02 HBA ? GO:0000166 ... Q8I6L9 21840922
    14 3atz:C (2.04) BS02 HBA ? GO:0000166 ... Q8I6L9 21840922
    15 3atz:D (2.04) BS02 HBA ? GO:0000166 ... Q8I6L9 21840922
    16 3hgj:A (2.0) BS02 HBA 1.6.99.1 GO:0000166 ... B0JDW3 20138824
    17 3hgj:B (2.0) BS02 HBA 1.6.99.1 GO:0000166 ... B0JDW3 20138824
    18 3hgj:C (2.0) BS02 HBA 1.6.99.1 GO:0000166 ... B0JDW3 20138824
    19 3hgj:D (2.0) BS02 HBA 1.6.99.1 GO:0000166 ... B0JDW3 20138824
    20 3zoc:A (2.1) BS02 HBA ? GO:0010181 ... O58586 24954722
    21 3zoe:A (1.85) BS01 HBA ? GO:0000166 ... Q72HI0 24954722
    22 3zoe:B (1.85) BS01 HBA ? GO:0000166 ... Q72HI0 24954722
    23 4jip:A (2.29) BS02 HBA ? GO:0000166 ... O31246 23606302
    24 4jqn:A (1.36) BS02 HBA 1.11.1.-
    1.11.1.5    		 GO:0004601 ... B3LRE1 23896298
    25 4rnv:A (2.473) BS02 HBA 1.6.99.1 GO:0010181 ... Q02899 25692074
    26 4rnv:B (2.473) BS02 HBA 1.6.99.1 GO:0010181 ... Q02899 25692074
    27 4rnv:C (2.473) BS02 HBA 1.6.99.1 GO:0010181 ... Q02899 25692074
    28 4rnv:D (2.473) BS02 HBA 1.6.99.1 GO:0010181 ... Q02899 25692074
    29 4tmc:A (1.8) BS02 HBA ? GO:0000166 ... Q6I7B7 25639703
    30 4tmc:B (1.8) BS02 HBA ? GO:0000166 ... Q6I7B7 25639703
    31 4tmc:C (1.8) BS02 HBA ? GO:0000166 ... Q6I7B7 25639703
    32 4tmc:D (1.8) BS02 HBA ? GO:0000166 ... Q6I7B7 25639703
    33 5dy3:A (1.82) BS02 HBA 1.3.1.92 GO:0005737 ... C5H429 N/A
    34 5e4m:A (1.801) BS01 HBA ? GO:0016829 ... A0A1C9V3S9 28466867
    35 5e4m:A (1.801) BS02 HBA ? GO:0016829 ... A0A1C9V3S9 28466867
    36 5e4m:A (1.801) BS03 HBA ? GO:0016829 ... A0A1C9V3S9 28466867
    37 5e4m:B (1.801) BS01 HBA ? GO:0016829 ... A0A1C9V3S9 28466867
    38 5e4m:B (1.801) BS02 HBA ? GO:0016829 ... A0A1C9V3S9 28466867
    39 5k1k:A (1.301) BS02 HBA 1.5.1.30 GO:0000166 ... Q8EBV3 28869767
    40 5k1k:A (1.301) BS03 HBA 1.5.1.30 GO:0000166 ... Q8EBV3 28869767
    41 5k1k:A (1.301) BS04 HBA 1.5.1.30 GO:0000166 ... Q8EBV3 28869767
    42 5k1k:A (1.301) BS05 HBA 1.5.1.30 GO:0000166 ... Q8EBV3 28869767
    43 5v4p:A (1.88) BS02 HBA 1.6.99.1 GO:0003959 ... P41816 N/A
    44 5v4p:B (1.88) BS02 HBA 1.6.99.1 GO:0003959 ... P41816 N/A
    45 6s31:A (1.63) BS01 HBA ? GO:0000166 ... M2XAQ9 31930452
    46 6s31:A (1.63) BS02 HBA ? GO:0000166 ... M2XAQ9 31930452
    47 6s31:A (1.63) BS03 HBA ? GO:0000166 ... M2XAQ9 31930452
    48 7eti:A (1.95) BS02 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    49 7eti:A (1.95) BS04 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    50 7eti:B (1.95) BS01 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    51 7eti:B (1.95) BS03 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    52 7eti:C (1.95) BS01 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    53 7eti:C (1.95) BS03 HBA 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    54 7oft:A (1.95) BS02 HBA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 35953531
    55 7pho:A (1.27) BS01 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    56 7pho:A (1.27) BS02 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    57 7pho:A (1.27) BS03 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    58 7pho:A (1.27) BS04 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    59 7pho:B (1.27) BS01 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    60 7pho:B (1.27) BS02 HBA 2.4.1.266 GO:0000166 ... K5B7Z4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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