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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1mh5:A (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492 PDBbind: -logKd/Ki=9.21, Kd=0.61nM
    2 1mh5:B (2.1) BS01 HAL ? N/A P01863 12948492 MOAD: Kd=0.61nM
    PDBbind: -logKd/Ki=9.21, Kd=0.61nM
    3 1mh5:H (2.1) BS01 HAL ? N/A P01863 12948492 MOAD: Kd=0.61nM
    4 1mh5:L (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492
    5 1mj7:H (2.25) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=4.5nM
    PDBbind: -logKd/Ki=8.35, Kd=4.50nM
    6 1mj7:L (2.25) BS01 HAL N/A N/A N/A 12948492 PDBbind: -logKd/Ki=8.35, Kd=4.50nM
    7 1mjj:A (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    PDBbind: -logKd/Ki=8.74, Kd=1.83nM
    8 1mjj:B (2.1) BS01 HAL N/A N/A N/A 12948492 PDBbind: -logKd/Ki=8.74, Kd=1.83nM
    9 1mjj:H (2.1) BS01 HAL N/A N/A N/A 12948492 MOAD: Kd=1.83nM
    10 1mjj:L (2.1) BS01 HAL N/A N/A N/A 12948492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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