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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2v0j:A (2.0) BS01 H2U 2.3.1.157
    2.7.7.23    		 GO:0000287 ... P43889 18029420
    2 3g1h:A (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    3 3g1h:A (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    4 3g1h:B (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    5 3g1h:B (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    6 3g1h:C (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    7 3g1h:C (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    8 3g1h:D (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    9 3g1h:D (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    10 3g1h:E (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    11 3g1h:E (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    12 3g1h:F (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    13 3g1h:F (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    14 3g1h:G (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    15 3g1h:G (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    16 3g1h:H (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    17 3g1h:H (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    18 3g1h:I (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    19 3g1h:I (2.3) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    20 3g1h:J (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    21 3g1h:K (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    22 3g1h:L (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    23 3g1h:M (2.3) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 19435314
    24 4o8r:A (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    25 4o8r:A (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    26 4o8r:B (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    27 4o8r:B (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    28 4o8r:C (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    29 4o8r:C (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    30 4o8r:D (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    31 4o8r:D (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    32 4o8r:E (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    33 4o8r:E (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    34 4o8r:F (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    35 4o8r:F (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    36 4o8r:G (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    37 4o8r:G (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    38 4o8r:H (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    39 4o8r:H (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    40 4o8r:I (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    41 4o8r:J (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    42 4o8r:K (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    43 4o8r:K (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    44 4o8r:L (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    45 4o8r:L (2.293) BS02 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    46 4o8r:M (2.293) BS01 H2U 4.1.1.23 GO:0004590 ... O26232 N/A
    47 5in3:A (1.73) BS03 H2U 2.7.7.12 GO:0005515 ... P07902 27005423
    48 5in3:B (1.73) BS02 H2U 2.7.7.12 GO:0005515 ... P07902 27005423
    49 6gqd:A (1.523) BS02 H2U 2.7.7.12 GO:0005515 ... P07902 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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