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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gic:A (2.0) BS01 GYP ? GO:0030246 ... P02866 15299735
    2 1gic:B (2.0) BS01 GYP ? GO:0030246 ... P02866 15299735
    3 1hkd:A (2.09) BS03 GYP ? GO:0030246 ... P02867 N/A
    4 1hkd:B (2.09) BS01 GYP ? GO:0030246 ... P02867 N/A
    5 1hkd:C (2.09) BS03 GYP ? GO:0030246 ... P02867 N/A
    6 1hkd:D (2.09) BS01 GYP ? GO:0030246 ... P02867 N/A
    7 1loa:A (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    8 1loa:B (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    9 1loa:C (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    10 1loa:D (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    11 1loa:E (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    12 1loa:F (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    13 1loa:G (2.2) BS01 GYP ? GO:0005515 ... P04122 2091026
    14 1loa:H (2.2) BS01 GYP ? GO:0005537 ... P12306 2091026
    15 1n3o:A (2.0) BS01 GYP ? GO:0030246 ... Q8GSD2 12595543
    16 1n3o:B (2.0) BS01 GYP ? GO:0030246 ... Q8GSD2 12595543
    17 1ws4:A (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1.00mM
    18 1ws4:C (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    19 1ws4:G (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    20 3r52:A (2.1) BS01 GYP ? GO:0002213 ... P93193 22808208 MOAD: Kd=498uM
    21 3r52:B (2.1) BS01 GYP ? GO:0002213 ... P93193 22808208 MOAD: Kd=498uM
    22 3r52:C (2.1) BS01 GYP ? GO:0002213 ... P93193 22808208 MOAD: Kd=498uM
    23 3r52:D (2.1) BS01 GYP ? GO:0002213 ... P93193 22808208 MOAD: Kd=498uM
    24 4jr9:A (2.6) BS01 GYP ? GO:0005452 ... P10903 23665960
    25 4jre:A (2.8) BS02 GYP ? GO:0005452 ... P10903 23665960
    26 4jre:D (2.8) BS02 GYP ? GO:0005452 ... P10903 23665960
    27 4rga:A (2.1) BS01 GYP ? GO:0046872 ... D3W0F1 25708888
    28 4rga:B (2.1) BS01 GYP ? GO:0046872 ... D3W0F1 25708888
    29 6xaq:A (1.2) BS06 GYP ? N/A A1YIY3 33824212
    30 7vl1:A (1.6) BS01 GYP ? GO:0004553 ... I0AIT9 35065074
    31 7ynj:A (3.33) BS02 GYP ? GO:0000017 ... P31639 37217492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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