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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5qic:A (1.34) BS02 GX4 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 N/A
    2 5r4y:A (1.84) BS01 GX4 3.6.1.- N/A Q6PL18 N/A
    3 5rah:A (1.66) BS01 GX4 1.14.11.65 GO:0032454 ... Q7LBC6 N/A
    4 5rko:A (1.42) BS01 GX4 ? N/A Q8WWQ0 N/A
    5 5rx6:A (1.45) BS01 GX4 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    6 5s4u:B (2.39) BS02 GX4 ? GO:0000226 ... Q6B856 33951246
    7 5sna:B (1.83) BS01 GX4 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    8 5so1:A (2.07) BS01 GX4 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    9 5so1:A (2.07) BS02 GX4 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    10 5so1:B (2.07) BS01 GX4 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    11 5so1:B (2.07) BS02 GX4 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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