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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xd3:A (1.45) BS03 GVE 3.4.19.12 GO:0004843 ... P15374 15531586
    2 1xd3:C (1.45) BS03 GVE 3.4.19.12 GO:0004843 ... P15374 15531586
    3 2j7q:A (1.8) BS02 GVE N/A N/A N/A 17349955
    4 2j7q:C (1.8) BS01 GVE N/A N/A N/A 17349955
    5 3ifw:A (2.4) BS01 GVE 3.4.19.12 GO:0002176 ... P09936 20439756
    6 3kvf:A (2.8) BS01 GVE 3.4.19.12 GO:0002176 ... P09936 20439756
    7 3kw5:A (2.83) BS01 GVE 3.4.19.12 GO:0002176 ... P09936 20439756
    8 4i6n:A (1.701) BS01 GVE N/A GO:0004843 ... N/A 23617878
    9 4i6n:C (1.701) BS01 GVE N/A GO:0004843 ... N/A 23617878
    10 4ig7:A (1.996) BS01 GVE N/A GO:0004843 ... N/A 23617878
    11 5cra:A (2.64) BS01 GVE ? GO:0016579 ... Q6RCR0 26598703
    12 5cra:B (2.64) BS01 GVE ? GO:0016579 ... Q6RCR0 26598703
    13 6ypt:A (3.663) BS01 GVE 2.1.1.-
    2.7.7.48
    3.4.19.12
    3.4.22.-
    3.6.4.-    		 GO:0004197 ... P10358 N/A
    14 6ypt:C (3.663) BS01 GVE 2.1.1.-
    2.7.7.48
    3.4.19.12
    3.4.22.-
    3.6.4.-    		 GO:0004197 ... P10358 N/A
    15 8dmq:A (2.195) BS01 GVE ? N/A Q5ZSJ1 38503748
    16 8dms:B (2.15) BS02 GVE ? N/A Q5ZSJ1 38503748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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