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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ams:A (2.7) BS02 GUA 2.6.1.1 GO:0003824 ... P00509 7896726
    2 1b4n:A (2.4) BS03 GUA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    3 1b4n:B (2.4) BS03 GUA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    4 1b4n:C (2.4) BS03 GUA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    5 1b4n:D (2.4) BS03 GUA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    6 1czc:A (2.5) BS02 GUA 2.6.1.1 GO:0003824 ... P00509 10731702 MOAD: Kd=1.5mM
    PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    7 1iyd:A (2.15) BS02 GUA 2.6.1.42 GO:0003824 ... P0AB80 12667063
    8 1iyd:B (2.15) BS02 GUA 2.6.1.42 GO:0003824 ... P0AB80 12667063
    9 1iyd:C (2.15) BS02 GUA 2.6.1.42 GO:0003824 ... P0AB80 12667063
    10 1jw0:B (2.5) BS01 GUA 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    11 1xey:A (2.05) BS02 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    12 1xey:A (2.05) BS04 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    13 1xey:B (2.05) BS02 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    14 1xey:B (2.05) BS04 GUA 4.1.1.15 GO:0004351 ... P69908 15735332
    15 3p4r:A (3.05) BS02 GUA 1.3.5.1 GO:0000104 ... P00363 21098488 PDBbind: -logKd/Ki=2.72, Ki=1.9mM
    16 3p4r:M (3.05) BS01 GUA 1.3.5.1 GO:0000104 ... P00363 21098488
    17 4jxy:A (1.9) BS01 GUA N/A GO:0004659 ... N/A N/A
    18 4lh3:A (1.813) BS01 GUA 1.2.1.88 GO:0003842 ... Q8CHT0 23928095 MOAD: Ki=30mM
    PDBbind: -logKd/Ki=1.52, Ki=30mM
    19 4lh3:B (1.813) BS01 GUA 1.2.1.88 GO:0003842 ... Q8CHT0 23928095 MOAD: Ki=30mM
    20 4utr:A (2.9) BS03 GUA 2.3.1.- GO:0036054 ... Q6DHI5 25111069
    21 5nya:A (1.2) BS03 GUA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29316128
    22 6hja:A (2.7) BS01 GUA ? GO:0004888 ... Q7NDN8 32627739
    23 6hja:A (2.7) BS02 GUA ? GO:0004888 ... Q7NDN8 32627739
    24 6hja:B (2.7) BS01 GUA ? GO:0004888 ... Q7NDN8 32627739
    25 6hja:B (2.7) BS02 GUA ? GO:0004888 ... Q7NDN8 32627739
    26 6hja:C (2.7) BS01 GUA ? GO:0004888 ... Q7NDN8 32627739
    27 6hja:C (2.7) BS02 GUA ? GO:0004888 ... Q7NDN8 32627739
    28 6hja:D (2.7) BS01 GUA ? GO:0004888 ... Q7NDN8 32627739
    29 6hja:D (2.7) BS02 GUA ? GO:0004888 ... Q7NDN8 32627739
    30 6hja:E (2.7) BS01 GUA ? GO:0004888 ... Q7NDN8 32627739
    31 6hja:E (2.7) BS02 GUA ? GO:0004888 ... Q7NDN8 32627739
    32 6hl8:A (2.4) BS02 GUA 1.14.11.64 GO:0005506 ... P76621 30498244
    33 6hl8:B (2.4) BS02 GUA 1.14.11.64 GO:0005506 ... P76621 30498244
    34 6iqh:A (2.999) BS02 GUA ? N/A P0DOX5 30606013
    35 6iqh:B (2.999) BS02 GUA ? N/A P0DOX5 30606013
    36 6ljk:A (1.394) BS03 GUA 2.3.1.- GO:0036054 ... Q9NXA8 32163813
    37 7kzd:C (1.9) BS01 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    38 7kzd:D (1.9) BS01 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    39 7kzd:E (1.9) BS02 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    40 7kzd:F (1.9) BS02 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    41 7kzd:G (1.9) BS01 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    42 7kzd:H (1.9) BS01 GUA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    43 7x51:A (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    44 7x51:A (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    45 7x51:B (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    46 7x51:C (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    47 7x51:C (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    48 7x51:D (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    49 7x51:D (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    50 7x51:E (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    51 7x51:F (2.0) BS01 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    52 7x51:F (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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