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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kcc:A (1.0) BS01 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    2 1kcd:A (1.15) BS02 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    3 1n7q:A (2.3) BS03 GTR 4.2.2.1 GO:0003824 ... Q8CWU3 12446724
    4 2v8k:A (2.1) BS03 GTR 4.2.2.2 GO:0016829 ... A1JSS8 17881361
    5 3njv:A (2.4) BS01 GTR 4.2.2.23 GO:0000272 ... Q00019 20851126
    6 3njv:A (2.4) BS02 GTR 4.2.2.23 GO:0000272 ... Q00019 20851126
    7 3njv:A (2.4) BS03 GTR 4.2.2.23 GO:0000272 ... Q00019 20851126
    8 4mij:A (1.1) BS01 GTR ? GO:0030288 ... Q128M1 25540822
    9 4n17:A (1.501) BS01 GTR ? GO:0030288 ... Q0B2F6 25540822
    10 4n8y:A (1.5) BS02 GTR N/A GO:0030288 ... N/A 25540822
    11 4n8y:B (1.5) BS02 GTR N/A GO:0030288 ... N/A 25540822
    12 4ovr:A (1.65) BS01 GTR ? GO:0030246 ... A7IKQ4 25540822
    13 4ovr:B (1.65) BS01 GTR ? GO:0030246 ... A7IKQ4 25540822
    14 4pf8:A (1.5) BS01 GTR N/A GO:0030288 ... N/A 25540822
    15 4pf8:B (1.5) BS01 GTR N/A GO:0030288 ... N/A 25540822
    16 4yz0:A (1.15) BS08 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    17 4yz0:B (1.15) BS11 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    18 4yza:A (1.25) BS09 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    19 4yza:B (1.25) BS07 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    20 4yzq:A (1.48) BS07 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    21 4yzq:B (1.48) BS07 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    22 4yzx:B (1.25) BS08 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    23 4z03:A (1.4) BS08 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    24 4z03:B (1.4) BS01 GTR 4.2.2.2 GO:0005576 ... B9MKT4 26327384
    25 5ols:A (2.2) BS03 GTR 3.2.1.22
    3.2.1.n1    		 GO:0004557 ... Q8A051 29255254
    26 6hze:A (2.7) BS01 GTR ? GO:0005975 ... A0A4V8GZY5 30877196
    27 6hze:B (2.7) BS01 GTR ? GO:0005975 ... A0A4V8GZY5 30877196
    28 6hzg:A (1.6) BS02 GTR ? GO:0005975 ... A0A4V8GZY5 30877196
    29 6hzg:A (1.6) BS03 GTR ? GO:0005975 ... A0A4V8GZY5 30877196
    30 6kxa:A (1.23) BS01 GTR ? GO:0030246 ... P17931 32909036
    31 6kxb:A (1.5) BS01 GTR ? GO:0030246 ... P17931 32909036
    32 6szo:A (2.2) BS01 GTR ? GO:0046872 ... B1ZMF4 31740581
    33 7vqm:A (2.4) BS01 GTR N/A GO:0004553 ... N/A 34818100
    34 7vqm:B (2.4) BS01 GTR N/A GO:0004553 ... N/A 34818100
    35 7vqm:C (2.4) BS01 GTR N/A GO:0004553 ... N/A 34818100
    36 7vqm:D (2.4) BS01 GTR N/A GO:0004553 ... N/A 34818100
    37 8qef:B (2.16) BS01 GTR ? N/A A6KWT9 38179933
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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