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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mdc:A (1.999) BS04 GTF 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 20348107
    2 6dw5:A (1.93) BS01 GTF 3.1.5.- N/A Q9Y3Z3 30305425
    3 6dw5:B (1.93) BS02 GTF 3.1.5.- N/A Q9Y3Z3 30305425
    4 6dw5:C (1.93) BS05 GTF 3.1.5.- N/A Q9Y3Z3 30305425
    5 6dw5:D (1.93) BS05 GTF 3.1.5.- N/A Q9Y3Z3 30305425
    6 8fv6:AAA (2.25) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    7 8fv6:AAA (2.25) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    8 8fv6:BBB (2.25) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    9 8fv6:BBB (2.25) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    10 8fv7:AAA (2.08) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    11 8fv7:AAA (2.08) BS03 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    12 8fv7:BBB (2.08) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    13 8fv7:BBB (2.08) BS03 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    14 8fv8:AAA (2.05) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    15 8fv8:AAA (2.05) BS03 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    16 8fv8:BBB (2.05) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    17 8fv8:BBB (2.05) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    18 8fvc:AAA (2.281) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    19 8fvc:AAA (2.281) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    20 8fvc:BBB (2.281) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    21 8fvc:BBB (2.281) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    22 8fvd:A (2.38) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    23 8fvd:A (2.38) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    24 8fvd:B (2.38) BS01 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    25 8fvd:B (2.38) BS02 GTF 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    26 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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