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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ipb:A (2.0) BS01 GTA ? GO:0000082 ... P06730 11879179
    2 1st4:A (2.02) BS01 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    3 1st4:B (2.02) BS01 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    4 1st4:B (2.02) BS02 GTA 3.6.1.59 GO:0000288 ... Q96C86 15068804
    5 1wkw:A (2.1) BS02 GTA ? GO:0003723 ... P06730 16271312
    6 2p3o:A (2.756) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q9WLZ5 17686489 PDBbind: -logKd/Ki=2.77, IC50=1.7mM
    7 3emd:A (2.0) BS02 GTA 2.1.1.57 GO:0000166 ... D0VX01 18976670
    8 3evf:A (1.45) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P03314 19101564 PDBbind: -logKd/Ki=6.77, Ki=170nM
    9 3evf:A (1.45) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P03314 19101564 PDBbind: -logKd/Ki=6.77, Ki=170nM
    10 3hxg:A (2.1) BS02 GTA N/A GO:0003723 ... N/A 19710013 MOAD: Kd=0.27uM
    11 5gp1:A (2.444) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A024B7W1 27866982
    12 5gp1:B (2.444) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A024B7W1 27866982
    13 5gp1:C (2.444) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A024B7W1 27866982
    14 5wz2:A (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A109PRQ3 28254839
    15 5wz2:B (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A109PRQ3 28254839
    16 5wz2:C (2.6) BS02 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A0A109PRQ3 28254839
    17 5ynf:A (1.791) BS01 GTA 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0004483 ... K0BWD0 N/A
    18 5ynm:A (1.68) BS02 GTA 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0004483 ... K0BWD0 N/A
    19 5yno:A (1.96) BS02 GTA 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0004483 ... K0BWD0 N/A
    20 5ynp:A (2.27) BS02 GTA 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0004483 ... K0BWD0 N/A
    21 6d0y:A (2.676) BS01 GTA ? GO:0000184 ... P52298 29654059
    22 6ty8:A (3.0) BS01 GTA ? GO:0001172 ... Q993A4 31695188
    23 6wks:AAA (1.8) BS03 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32709886
    24 6wq3:A (2.1) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32994211
    25 6wrz:A (2.25) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32994211
    26 6wvn:A (2.0) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 32994211
    27 7fgi:A (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    28 7fgi:B (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    29 7fgi:C (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    30 7fgi:D (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    31 7fgi:E (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    32 7fgi:F (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    33 7fgi:G (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    34 7fgi:H (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    35 7fgi:I (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    36 7fgi:J (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    37 7fgi:K (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    38 7fgi:L (2.51) BS03 GTA 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 35905713
    39 7jib:A (2.65) BS03 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 33972410
    40 7jpe:A (2.18) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 33972410
    41 7koa:A (2.4) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    42 7koa:A (2.4) BS03 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    43 7qtl:C (2.48) BS03 GTA ? GO:0001172 ... X5F427 36596301
    44 7r0e:C (2.51) BS03 GTA ? GO:0001172 ... X5F427 36596301
    45 7r1f:C (2.58) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    46 7r1u:A (2.5) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 36040262
    47 7v1j:A (1.98) BS01 GTA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... C4TPE0 35758665
    48 8bdr:C (2.7) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    49 8be0:C (2.34) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    50 8bek:C (2.86) BS03 GTA ? GO:0001172 ... X5F427 36596301
    51 8bf5:C (2.96) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    52 8s8w:A (2.1) BS04 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    53 8s8x:A (1.99) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    54 9emj:A (1.79) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    55 9eml:A (2.4) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    56 9emv:A (2.34) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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