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BioLiP
Download all results in tab-seperated text for 296 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6ut5:E (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    202 6ut5:E (2.44) BS02 GSP ? GO:0004519 ... C5A3Z3 33219217
    203 6ut5:F (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    204 6ut6:A (3.28) BS02 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    205 6ut6:B (3.28) BS01 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    206 6ut6:C (3.28) BS01 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    207 6ut6:C (3.28) BS02 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    208 6ut6:D (3.28) BS01 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    209 6ut6:D (3.28) BS02 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    210 6ut6:E (3.28) BS01 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    211 6ut6:E (3.28) BS02 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    212 6ut6:F (3.28) BS01 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    213 6ut6:F (3.28) BS02 GSP 3.1.21.- GO:0003677 ... P15005 33219217
    214 6ut7:B (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    215 6ut7:C (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    216 6ut7:C (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    217 6ut7:D (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    218 6ut7:D (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    219 6ut7:E (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    220 6ut7:E (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    221 6ut7:F (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    222 6ut7:I (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    223 6ut7:J (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    224 6ut7:J (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    225 6ut7:K (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    226 6ut7:K (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    227 6ut7:L (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    228 6ut7:L (4.26) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    229 6ut7:M (4.26) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    230 6ut8:B (3.68) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    231 6ut8:C (3.68) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    232 6ut8:C (3.68) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    233 6ut8:D (3.68) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    234 6ut8:D (3.68) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    235 6ut8:E (3.68) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    236 6ut8:E (3.68) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    237 6ut8:F (3.68) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    238 6vii:A (2.0) BS02 GSP ? GO:0001779 ... Q9D4V7 32220963
    239 6vii:B (2.0) BS02 GSP ? GO:0001779 ... Q9D4V7 32220963
    240 6vik:B (1.7) BS01 GSP ? N/A Q9D4V7 32220963
    241 6w4e:B (-1.00) BS01 GSP 3.6.5.2 GO:0000139 ... P01116 32227412
    242 6w4e:C (-1.00) BS02 GSP 3.6.5.2 GO:0000139 ... P01116 32227412
    243 6y1v:A (2.4) BS01 GSP ? GO:0003924 ... P9WN95 34023403
    244 6ym9:A (2.03) BS01 GSP ? GO:0003924 ... P9WN95 34023403
    245 7d8l:A (1.55) BS01 GSP 3.6.1.15
    3.6.1.6    		 GO:0000287 ... Q7A4T2 33955674
    246 7ezd:B (1.76) BS01 GSP ? GO:0003924 ... A0A135VL07 N/A
    247 7eze:A (1.95) BS01 GSP ? GO:0003924 ... A0A135VL07 N/A
    248 7eze:B (1.95) BS01 GSP ? GO:0003924 ... A0A135VL07 N/A
    249 7l0f:A (1.98) BS02 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    250 7l0f:B (1.98) BS01 GSP N/A N/A N/A 33976200
    251 7l0f:E (1.98) BS02 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    252 7l0f:F (1.98) BS01 GSP N/A N/A N/A 33976200
    253 7l0f:G (1.98) BS02 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    254 7l0f:H (1.98) BS01 GSP N/A N/A N/A 33976200
    255 7l0f:L (1.98) BS02 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    256 7l0f:M (1.98) BS01 GSP N/A N/A N/A 33976200
    257 7l0g:A (2.54) BS01 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    258 7l0g:B (2.54) BS01 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    259 7l0g:C (2.54) BS01 GSP N/A N/A N/A 33976200
    260 7l0g:D (2.54) BS01 GSP N/A N/A N/A 33976200
    261 7l0g:E (2.54) BS01 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    262 7l0g:F (2.54) BS01 GSP N/A N/A N/A 33976200
    263 7l0g:G (2.54) BS01 GSP 3.6.5.2 GO:0003924 ... P01112 33976200
    264 7l0g:H (2.54) BS01 GSP N/A N/A N/A 33976200
    265 7pde:B (4.5) BS01 GSP ? GO:0003924 ... P04896 35210418
    266 7pdf:B (3.8) BS01 GSP ? GO:0003924 ... P04896 35210418
    267 7r04:A (3.7) BS01 GSP ? GO:0000165 ... P21359 35353986
    268 7rsc:A (-1.00) BS01 GSP 3.6.5.2 GO:0000139 ... P01116 34703570
    269 7rsc:B (-1.00) BS03 GSP 3.6.5.2 GO:0000139 ... P01116 34703570
    270 7rse:A (-1.00) BS01 GSP 3.6.5.2 GO:0000139 ... P01116 34703570
    271 7rse:B (-1.00) BS01 GSP 3.6.5.2 GO:0000139 ... P01116 34703570
    272 7scw:A (1.98) BS02 GSP 3.6.5.2 GO:0000139 ... P01116 35257782
    273 7scx:A (1.96) BS02 GSP 3.6.5.2 GO:0000139 ... P01116 35257782
    274 7ysq:B (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    275 7ysq:G (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    276 7ysq:H (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    277 7ysq:I (6.8) BS02 GSP ? GO:0000226 ... Q24560 37749104
    278 7ysr:B (4.3) BS01 GSP ? GO:0000226 ... Q24560 37749104
    279 7ysr:D (4.3) BS01 GSP ? GO:0000226 ... Q24560 37749104
    280 8buz:B (3.5) BS01 GSP ? GO:0003924 ... P04896 38351373
    281 8bv5:B (3.54) BS01 GSP ? GO:0003924 ... P04896 38351373
    282 8f0m:C (2.44) BS01 GSP 3.6.5.2 GO:0003924 ... P01116 37399416
    283 8fcb:E (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    284 8fcb:F (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    285 8fcb:G (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    286 8fcb:H (3.55) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 37353484
    287 8g5z:EF (2.64) BS05 GSP 3.6.5.- GO:0000049 ... P68105 37020024
    288 8g60:EF (2.54) BS04 GSP 3.6.5.- GO:0000049 ... P68104 37020024
    289 8g6j:EF (2.8) BS05 GSP 3.6.5.- GO:0000049 ... P68104 37020024
    290 8htg:A (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    291 8htg:B (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    292 8htg:C (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    293 8htg:D (2.91) BS02 GSP ? GO:0001975 ... Q8CGK7 38062020
    294 8r4b:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    295 8r4d:A (3.88) BS01 GSP ? GO:0000166 ... Q8KC98 38666771
    296 8wgo:A (3.7) BS02 GSP N/A N/A A0A2U3S0J5 39154050
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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