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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 296 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a2b:A (2.4) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 9545299
    2 1as0:A (2.0) BS02 GSP ? GO:0000287 ... P10824 9398294
    3 1azs:C (2.3) BS02 GSP ? GO:0003924 ... P04896 9417641
    4 1azt:A (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    5 1azt:B (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    6 1bh2:A (2.1) BS02 GSP ? GO:0003924 ... P10824 9705312
    7 1cjk:C (3.0) BS02 GSP ? GO:0003924 ... P04896 10427002
    8 1cjt:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    9 1cju:C (2.8) BS02 GSP ? GO:0003924 ... P04896 10427002
    10 1cjv:C (3.0) BS03 GSP ? GO:0003924 ... P04896 10427002
    11 1cs4:C (2.5) BS02 GSP ? GO:0003924 ... P04896 11087399
    12 1cul:C (2.4) BS02 GSP ? GO:0003924 ... P04896 11087399
    13 1cxz:A (2.2) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 10619026
    14 1gia:A (2.0) BS02 GSP ? GO:0000287 ... P10824 8073283
    15 1gil:A (2.3) BS02 GSP ? GO:0000287 ... P10824 8073283
    16 1oiw:A (2.05) BS01 GSP 3.6.5.2 GO:0003924 ... P62491 14699104
    17 1rlu:A (2.08) BS01 GSP ? GO:0000287 ... P9WN95 15342249
    18 1tl7:C (2.8) BS02 GSP ? GO:0003924 ... P04896 15591060
    19 1tnd:A (2.2) BS02 GSP ? GO:0000035 ... P04695 8259210
    20 1tnd:B (2.2) BS02 GSP ? GO:0000035 ... P04695 8259210
    21 1tnd:C (2.2) BS02 GSP ? GO:0000035 ... P04695 8259210
    22 1u0h:C (2.9) BS02 GSP ? GO:0003924 ... P04896 15591060
    23 1yr7:A (2.08) BS01 GSP 3.6.5.- GO:0003924 ... Q9UYR9 17468740
    24 1z5v:A (2.71) BS01 GSP ? GO:0000070 ... P23258 15917813
    25 2ffq:A (1.78) BS02 GSP 3.6.5.2 GO:0003924 ... Q9NRW1 16790928
    26 2fju:A (2.2) BS02 GSP 3.6.5.2 GO:0001764 ... P63000 17115053
    27 2gcp:A (2.15) BS03 GSP ? GO:0000281 ... P08134 17497936
    28 2gvd:C (2.9) BS02 GSP ? GO:0003924 ... P04896 16766715
    29 2gvz:C (3.27) BS02 GSP ? GO:0003924 ... P04896 16766715
    30 2hf8:A (2.1) BS04 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    PDBbind: -logKd/Ki=5.47, Kd=3.4uM
    31 2hf8:B (2.1) BS01 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    PDBbind: -logKd/Ki=5.47, Kd=3.4uM
    32 2hf8:B (2.1) BS05 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    PDBbind: -logKd/Ki=5.47, Kd=3.4uM
    33 2hf9:A (1.9) BS03 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    34 2hf9:B (1.9) BS01 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    35 2hf9:B (1.9) BS04 GSP ? GO:0003924 ... Q57884 16807243 MOAD: Kd=3.4uM
    36 2j5x:A (2.8) BS01 GSP 3.6.5.2 GO:0001726 ... P62330 11266366
    37 2j5x:B (2.8) BS01 GSP 3.6.5.2 GO:0001726 ... P62330 11266366
    38 2j5x:B (2.8) BS02 GSP 3.6.5.2 GO:0001726 ... P62330 11266366
    39 2q1y:A (2.3) BS01 GSP ? GO:0000287 ... P9WN95 N/A
    40 2rho:A (2.45) BS01 GSP ? GO:0003924 ... P17865 19383143
    41 2w2x:A (2.3) BS01 GSP ? GO:0003924 ... P15153 19394299
    42 2w2x:B (2.3) BS01 GSP ? GO:0003924 ... P15153 19394299
    43 2xka:A (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    44 2xka:B (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    45 2xka:C (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    46 2xka:D (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    47 2xka:E (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    48 2xka:F (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    49 2xka:G (3.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20974911
    50 2xtz:A (2.34) BS02 GSP 3.6.5.1 GO:0001664 ... P18064 21304159
    51 2xtz:B (2.34) BS02 GSP 3.6.5.1 GO:0001664 ... P18064 21304159
    52 2xtz:C (2.34) BS02 GSP 3.6.5.1 GO:0001664 ... P18064 21304159
    53 3c14:C (2.68) BS02 GSP ? GO:0003924 ... P04896 19243146
    54 3c15:C (2.78) BS01 GSP ? GO:0003924 ... P04896 19243146
    55 3c16:C (2.87) BS02 GSP ? GO:0003924 ... P04896 19243146
    56 3cx8:A (2.0) BS02 GSP ? GO:0001664 ... P27601 18940608
    57 3ffa:A (2.3) BS01 GSP ? GO:0000287 ... P10824 19703466 MOAD: Kd=0.69uM
    58 3g82:C (3.11) BS02 GSP ? GO:0003924 ... P04896 N/A
    59 3jak:B (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    60 3jak:D (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    61 3jak:F (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    62 3jak:G (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    63 3jak:H (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    64 3jak:I (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    65 3jaw:B (3.9) BS01 GSP ? GO:0000226 ... P02554 26234155
    66 3jaw:D (3.9) BS01 GSP ? GO:0000226 ... P02554 26234155
    67 3kz1:E (2.7) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 20430886
    68 3kz1:F (2.7) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 20430886
    69 3m89:A (2.0) BS01 GSP 3.6.5.- N/A Q8KNP3 20534443 MOAD: Kd=0.69uM
    PDBbind: -logKd/Ki=6.16, Kd=0.69uM
    70 3maa:C (3.0) BS02 GSP ? GO:0003924 ... P04896 19243146
    71 3reg:A (1.801) BS01 GSP 3.6.5.2 GO:0003924 ... P31021 21930699
    72 3reg:B (1.801) BS01 GSP 3.6.5.2 GO:0003924 ... P31021 21930699
    73 3tvd:A (2.989) BS01 GSP 3.6.5.2 GO:0000902 ... P61589 23001747
    74 3tvd:B (2.989) BS01 GSP 3.6.5.2 GO:0000902 ... P61589 23001747
    75 3wgn:A (2.606) BS01 GSP ? GO:0000917 ... P0A029 24347164
    76 3wgn:B (2.606) BS01 GSP ? GO:0000917 ... P0A029 24347164
    77 4abo:A (8.6) BS01 GSP 3.6.5.6 GO:0000226 ... P02554 22500803
    78 4abo:C (8.6) BS01 GSP 3.6.5.6 GO:0000226 ... P02554 22500803
    79 4abo:E (8.6) BS01 GSP 3.6.5.6 GO:0000226 ... P02554 22500803
    80 4abo:G (8.6) BS01 GSP 3.6.5.6 GO:0000226 ... P02554 22500803
    81 4abo:I (8.6) BS01 GSP ? GO:0008017 ... Q10113 22500803
    82 4b45:A (2.1) BS02 GSP ? GO:0003924 ... D4GTC1 25533961
    83 4d0l:B (2.94) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    84 4d0l:D (2.94) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    85 4d0l:F (2.94) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    86 4d0m:B (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    87 4d0m:D (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    88 4d0m:H (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    89 4d0m:J (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    90 4d0m:N (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    91 4d0m:P (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    92 4d0m:R (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    93 4d0m:T (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    94 4d0m:X (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    95 4d0m:Z (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    96 4d0m:d (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    97 4d0m:h (6.0) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 24876499
    98 4dso:A (1.85) BS01 GSP 3.6.5.2 GO:0000139 ... P01116 22431598
    99 4dvg:A (2.604) BS01 GSP 3.6.5.2 GO:0003924 ... P31021 23050667
    100 4dxa:A (1.95) BS01 GSP 3.6.5.2 GO:0003924 ... P61224 22577140
    101 4ei9:B (3.3) BS01 GSP 3.6.5.- GO:0003924 ... Q74P24 22847006
    102 4gzm:A (2.8) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 23284172
    103 4gzm:B (2.8) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 23284172
    104 4n0d:A (1.55) BS02 GSP 3.6.5.1 GO:0000287 ... P10824 24596087
    105 4pao:A (2.003) BS01 GSP ? GO:0000287 ... P10824 25037222
    106 4paq:A (2.0) BS01 GSP ? GO:0000287 ... P10824 25037222
    107 4tmt:A (1.58) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    108 4tmt:B (1.58) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    109 4tmv:A (1.53) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    110 4tmv:B (1.53) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    111 4tmz:A (2.28) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612 MOAD: Kd=0.92uM
    112 4tmz:B (2.28) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612 MOAD: Kd=0.92uM
    113 4tn1:A (2.75) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    114 4tn1:B (2.75) BS01 GSP 3.6.5.3 GO:0003924 ... G0S8G9 25225612
    115 4xsg:A (1.8) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 26067270
    116 4xsh:A (2.5) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 26067270
    117 5c46:F (2.65) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 26756197
    118 5cyp:A (2.893) BS01 GSP ? GO:0005525 ... Q9UHD8 N/A
    119 5cyp:A (2.893) BS03 GSP ? GO:0005525 ... Q9UHD8 N/A
    120 5cyp:B (2.893) BS01 GSP ? GO:0005525 ... Q9UHD8 N/A
    121 5cyp:B (2.893) BS02 GSP ? GO:0005525 ... Q9UHD8 N/A
    122 5cyp:C (2.893) BS01 GSP ? GO:0005525 ... Q9UHD8 N/A
    123 5cyp:C (2.893) BS03 GSP ? GO:0005525 ... Q9UHD8 N/A
    124 5cyp:D (2.893) BS01 GSP ? GO:0005525 ... Q9UHD8 N/A
    125 5cyp:D (2.893) BS02 GSP ? GO:0005525 ... Q9UHD8 N/A
    126 5fbl:B (3.372) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 N/A
    127 5fbr:B (3.28) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 N/A
    128 5fbv:B (3.285) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 N/A
    129 5fbw:B (3.487) BS01 GSP 3.6.5.2 GO:0000139 ... P62491 N/A
    130 5irr:A (2.04) BS02 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    131 5irr:A (2.04) BS03 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    PDBbind: -logKd/Ki=5.27, Kd=5.4uM
    132 5irr:B (2.04) BS01 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    133 5irr:B (2.04) BS03 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    134 5k8l:A (1.751) BS01 GSP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... A0A146CJG7 27915293
    135 5k8t:A (1.848) BS01 GSP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... A0A146CJG7 27915293
    136 5kdl:A (2.665) BS02 GSP ? GO:0000287 ... P10824 27462082
    137 5kdl:B (2.665) BS02 GSP ? GO:0000287 ... P10824 27462082
    138 5mla:A (2.19) BS02 GSP 3.6.5.2 GO:0003924 ... P01116 N/A
    139 5o2t:A (2.19) BS02 GSP 3.6.5.2 GO:0003924 ... P01116 28706291 MOAD: Kd=3.9nM
    140 5vpz:A (1.85) BS01 GSP 3.6.5.2 GO:0003924 ... P01116 29199977
    141 5vpz:B (1.85) BS01 GSP 3.6.5.2 GO:0003924 ... P01116 29199977
    142 5vq6:A (1.99) BS01 GSP 3.6.5.2 GO:0003924 ... P01116 29199977
    143 5vq6:B (1.99) BS01 GSP 3.6.5.2 GO:0003924 ... P01116 29199977
    144 6bc0:F (2.198) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29196061
    145 6bc1:A (2.9) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 29196061
    146 6bc1:B (2.9) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 29196061
    147 6bca:C (1.995) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    148 6bca:F (1.995) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    149 6bcb:F (1.401) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    150 6dpw:B (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    151 6dpw:D (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    152 6dpw:F (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    153 6dpw:G (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    154 6dpw:H (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    155 6dpw:I (3.5) BS01 GSP ? GO:0000226 ... P02554 29915050
    156 6evy:B (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    157 6evy:D (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    158 6evy:F (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    159 6evy:G (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    160 6evy:H (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    161 6evy:I (4.4) BS01 GSP ? GO:0000226 ... P02554 29967541
    162 6gaw:BC (3.2) BS04 GSP ? GO:0003743 ... P46199 30089917
    163 6gaz:BC (3.1) BS03 GSP ? GO:0003743 ... P46199 30089917
    164 6gb2:BC (3.2) BS03 GSP ? GO:0003743 ... P46199 30089917
    165 6h17:A (1.275) BS01 GSP ? GO:0003924 ... Q1DB04 31757955
    166 6h5b:A (2.8) BS01 GSP ? GO:0003924 ... Q1DB04 31757955
    167 6izw:A (2.4) BS01 GSP 3.6.5.2 GO:0003924 ... Q1DB04 31560685
    168 6jik:A (2.35) BS01 GSP ? GO:0000148 ... A0A068C8U8 N/A
    169 6m8h:A (2.07) BS01 GSP ? GO:0000287 ... P10824 N/A
    170 6pc3:A (2.1) BS01 GSP ? GO:0016462 ... B5ZA44 31679177
    171 6pc3:A (2.1) BS04 GSP ? GO:0016462 ... B5ZA44 31679177
    172 6pc3:B (2.1) BS01 GSP ? GO:0016462 ... B5ZA44 31679177
    173 6pc3:B (2.1) BS02 GSP ? GO:0016462 ... B5ZA44 31679177
    174 6r3q:B (3.4) BS01 GSP ? GO:0003924 ... P04896 31023924
    175 6r4o:B (4.2) BS01 GSP ? GO:0003924 ... P04896 31023924
    176 6r4p:B (3.1) BS01 GSP ? GO:0003924 ... P04896 31023924
    177 6ut3:B (2.95) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    178 6ut3:C (2.95) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    179 6ut3:C (2.95) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    180 6ut3:D (2.95) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    181 6ut3:D (2.95) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    182 6ut3:E (2.95) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    183 6ut3:E (2.95) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    184 6ut3:F (2.95) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    185 6ut4:A (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    186 6ut4:B (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    187 6ut4:C (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    188 6ut4:C (3.1) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    189 6ut4:D (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    190 6ut4:D (3.1) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    191 6ut4:E (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    192 6ut4:E (3.1) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    193 6ut4:F (3.1) BS01 GSP ? GO:0005524 ... C5A3Z3 33219217
    194 6ut4:F (3.1) BS02 GSP ? GO:0005524 ... C5A3Z3 33219217
    195 6ut5:A (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    196 6ut5:B (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    197 6ut5:C (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    198 6ut5:C (2.44) BS02 GSP ? GO:0004519 ... C5A3Z3 33219217
    199 6ut5:D (2.44) BS01 GSP ? GO:0004519 ... C5A3Z3 33219217
    200 6ut5:D (2.44) BS02 GSP ? GO:0004519 ... C5A3Z3 33219217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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