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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4chs:A (1.6) BS01 GS8 2.5.1.18 GO:0004364 ... Q9FQE8 25479053
    2 4chs:B (1.6) BS01 GS8 2.5.1.18 GO:0004364 ... Q9FQE8 25479053
    3 6ezy:B (2.35) BS02 GS8 2.5.1.18 GO:0000325 ... O80852 29732642
    4 6f01:B (2.5) BS02 GS8 2.5.1.18 GO:0000325 ... O80852 29732642
    5 6riv:A (1.33) BS01 GS8 2.5.1.18 GO:0004364 ... Q9ZS17 32088578
    6 6riv:B (1.33) BS01 GS8 2.5.1.18 GO:0004364 ... Q9ZS17 32088578
    7 7pka:A (2.16) BS01 GS8 ? GO:0004364 ... Q55139 N/A
    8 7pka:B (2.16) BS01 GS8 ? GO:0004364 ... Q55139 N/A
    9 7zvp:A (1.61) BS01 GS8 2.5.1.18 GO:0004364 ... B9HKX9 36032685
    10 9f7k:A (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    11 9f7k:B (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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