Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 95 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h47:A (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    2 1h47:B (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    3 1h47:C (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    4 1h47:D (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    5 1h47:E (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    6 1h47:F (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    7 1h48:A (2.3) BS06 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    8 1h48:B (2.3) BS04 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    9 1h48:C (2.3) BS06 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    10 1h48:D (2.3) BS05 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    11 1h48:E (2.3) BS04 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    12 1h48:F (2.3) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    13 1ubw:A (2.5) BS03 GPP 2.5.1.1
    2.5.1.10    		 GO:0004161 ... P08836 8986756
    14 1w55:A (2.3) BS03 GPP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... Q9PM68 15466439
    15 1w57:A (3.09) BS04 GPP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... Q9PM68 15466439
    16 1yqn:A (3.11) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 16511114
    17 1zcw:A (2.25) BS01 GPP ? GO:0004659 ... Q4R2T2 15959519
    18 2amt:A (2.3) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    19 2amt:B (2.3) BS02 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    20 2amt:C (2.3) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    21 2amt:D (2.3) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    22 2amt:E (2.3) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    23 2amt:F (2.3) BS02 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    24 2e8x:A (2.04) BS03 GPP 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    25 2e8x:B (2.04) BS03 GPP 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... Q12051 17535895
    26 2gzl:A (2.5) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 16392111
    27 2vg0:A (1.7) BS01 GPP 2.5.1.68 GO:0016765 ... P9WFF5 18597781
    28 2vg0:B (1.7) BS01 GPP 2.5.1.68 GO:0016765 ... P9WFF5 18597781
    29 2vg3:A (1.8) BS01 GPP 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    30 2vg3:B (1.8) BS01 GPP 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    31 2vg3:C (1.8) BS02 GPP 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    32 2vg3:D (1.8) BS01 GPP 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 18597781
    33 3elc:A (2.5) BS04 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    34 3elc:B (2.5) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    35 3elc:C (2.5) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    36 3ern:A (2.1) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    37 3ern:B (2.1) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    38 3ern:C (2.1) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    39 3ern:D (2.1) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    40 3ern:E (2.1) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    41 3ern:F (2.1) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    42 3esj:A (2.7) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    43 3fba:A (3.1) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 19320487
    44 3krp:D (2.42) BS01 GPP 2.5.1.1 GO:0004659 ... Q9SBR3 20139160
    45 3vc2:A (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    46 3vc2:D (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    47 3vc2:H (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    48 3vc2:J (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    49 3zmc:A (1.87) BS01 GPP 2.5.1.10 GO:0004659 ... Q9HWY4 25760619
    50 3zmc:B (1.87) BS01 GPP 2.5.1.10 GO:0004659 ... Q9HWY4 25760619
    51 3zou:A (1.55) BS03 GPP 2.5.1.10 GO:0004659 ... Q9HWY4 25760619
    52 4f86:A (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    53 4f86:B (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    54 4f86:C (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    55 4f86:D (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    56 4f86:E (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    57 4f86:F (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    58 4f86:G (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    59 4f86:H (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    60 4f86:I (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    61 4f86:J (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    62 4f86:K (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    63 4f86:L (3.0) BS02 GPP 2.1.1.255 GO:0000287 ... D3KYU3 23090405
    64 4tq3:A (2.4076) BS01 GPP ? GO:0005886 ... O28625 25051182 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    65 4tq3:B (2.4076) BS01 GPP ? GO:0005886 ... O28625 25051182 MOAD: Kd=3.2uM
    66 4tq3:C (2.4076) BS01 GPP ? GO:0005886 ... O28625 25051182 MOAD: Kd=3.2uM
    67 4tq3:D (2.4076) BS01 GPP ? GO:0005886 ... O28625 25051182 MOAD: Kd=3.2uM
    68 5b00:A (2.95) BS01 GPP ? N/A A0A010 26954060
    69 5b00:B (2.95) BS01 GPP ? N/A A0A010 26954060
    70 5b00:C (2.95) BS01 GPP ? N/A A0A010 26954060
    71 5b03:A (2.6) BS01 GPP ? GO:0003677 ... A0A010
    P39476    		 26954060
    72 5b03:B (2.6) BS01 GPP ? GO:0003677 ... A0A010
    P39476    		 26954060
    73 5b03:C (2.6) BS01 GPP ? GO:0003677 ... A0A010
    P39476    		 26954060
    74 5b03:D (2.6) BS01 GPP ? GO:0003677 ... A0A010
    P39476    		 26954060
    75 5gp0:A (1.702) BS01 GPP 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    76 5gp0:E (1.702) BS01 GPP 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    77 5gp0:F (1.702) BS01 GPP 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    78 5gp0:I (1.702) BS01 GPP 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    79 5xk8:A (2.304) BS01 GPP ? GO:0002094 ... M4T4U9 29215779
    80 5xk8:B (2.304) BS01 GPP ? GO:0002094 ... M4T4U9 29215779
    81 5xk8:C (2.304) BS01 GPP ? GO:0002094 ... M4T4U9 29215779
    82 5xk8:D (2.304) BS01 GPP ? GO:0002094 ... M4T4U9 29215779
    83 6pgn:A (1.85) BS01 GPP 2.-.-.- GO:0016740 ... A0A1J1JDI6 29924593
    84 6ypf:A (1.45) BS01 GPP 3.6.1.68 GO:0005737 ... M4I1C6 32639596
    85 7fhb:A (1.9) BS01 GPP ? GO:0004659 ... Q4R2T2 N/A
    86 8a70:A (2.1) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    87 8a73:A (1.6) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    88 8a73:A (1.6) BS04 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    89 8a73:B (1.6) BS01 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    90 8a74:A (1.9) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    91 8a74:B (1.9) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    92 8a78:A (1.6) BS04 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    93 8a7l:A (1.85) BS04 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    94 8a7r:A (2.0) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    95 8a7u:A (1.55) BS03 GPP 2.5.1.1 GO:0004659 ... M1JS91 37308711
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218