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BioLiP
Download all results in tab-seperated text for 904 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7dkt:A (1.65) BS09 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    802 7dkt:A (1.65) BS10 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    803 7dku:A (1.6) BS02 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    804 7dku:A (1.6) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    805 7dku:A (1.6) BS04 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    806 7dku:A (1.6) BS05 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    807 7dku:A (1.6) BS06 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    808 7dku:A (1.6) BS07 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    809 7dku:A (1.6) BS08 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    810 7dku:A (1.6) BS09 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    811 7dku:A (1.6) BS10 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    812 7dkv:A (1.7) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    813 7dkv:A (1.7) BS04 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    814 7dkv:A (1.7) BS05 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    815 7dkv:A (1.7) BS06 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    816 7dkv:A (1.7) BS07 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    817 7dkv:A (1.7) BS08 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    818 7dkv:A (1.7) BS09 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    819 7dkw:A (1.78) BS02 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    820 7dkw:A (1.78) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    821 7dkw:B (1.78) BS02 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    822 7dkw:B (1.78) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    823 7dkx:A (1.7) BS02 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    824 7dkx:A (1.7) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    825 7dkx:A (1.7) BS04 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    826 7dkx:A (1.7) BS05 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    827 7dkx:A (1.7) BS06 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    828 7dkx:A (1.7) BS07 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    829 7dkx:A (1.7) BS08 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    830 7dky:A (1.95) BS02 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    831 7dky:A (1.95) BS03 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    832 7dky:A (1.95) BS04 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    833 7dky:A (1.95) BS05 GOL 3.2.1.45 GO:0004348 ... F6BL85 34019851
    834 7etx:A (2.1) BS01 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    835 7etx:A (2.1) BS02 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    836 7ety:A (2.21) BS03 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    837 7ety:A (2.21) BS04 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    838 7ety:B (2.21) BS01 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    839 7ety:B (2.21) BS04 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    840 7ety:B (2.21) BS05 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    841 7ety:B (2.21) BS06 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    842 7ety:B (2.21) BS07 GOL 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    843 7q4h:A (2.00003) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    844 7q4h:A (2.00003) BS02 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    845 7q4h:A (2.00003) BS03 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    846 7q4h:B (2.00003) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    847 7q4j:A (1.91) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    848 7q4j:B (1.91) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    849 7q4j:B (1.91) BS02 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    850 7q4j:B (1.91) BS03 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    851 7q4j:B (1.91) BS04 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    852 7qd7:AAA (2.06) BS02 GOL N/A GO:0016757 ... N/A 38000019
    853 7wex:A (1.99) BS02 GOL ? GO:0004497 ... Q82A10 35426465
    854 7wsz:A (1.52) BS02 GOL 4.4.1.5 GO:0004462 ... Q04760 35363883
    855 7wsz:A (1.52) BS03 GOL 4.4.1.5 GO:0004462 ... Q04760 35363883
    856 7wsz:B (1.52) BS02 GOL 4.4.1.5 GO:0004462 ... Q04760 35363883
    857 7wsz:B (1.52) BS04 GOL 4.4.1.5 GO:0004462 ... Q04760 35363883
    858 7xac:A (1.8) BS01 GOL ? GO:0005515 ... P47929 36293173
    859 7xac:B (1.8) BS01 GOL ? GO:0005515 ... P47929 36293173
    860 7xbl:A (2.0) BS01 GOL ? GO:0005515 ... P47929 36293173
    861 7xbl:B (2.0) BS01 GOL ? GO:0005515 ... P47929 36293173
    862 7xbl:B (2.0) BS02 GOL ? GO:0005515 ... P47929 36293173
    863 7ym1:A (2.36) BS02 GOL ? GO:0003697 ... A0A0D1JHQ1 37834349
    864 7yq2:B (1.9) BS17 GOL ? GO:0009521 ... Q8DIQ1 36334624
    865 7yq2:C (1.9) BS15 GOL ? GO:0005737 ... Q8DIF8 36334624
    866 7yq2:O (1.9) BS02 GOL ? GO:0009654 ... P0A431 36334624
    867 7yq2:V (1.9) BS02 GOL ? GO:0005506 ... P0A386 36334624
    868 7yq2:V (1.9) BS03 GOL ? GO:0005506 ... P0A386 36334624
    869 7yq2:c (1.9) BS16 GOL ? GO:0005737 ... Q8DIF8 36334624
    870 7yq2:d (1.9) BS06 GOL 1.10.3.9 GO:0005506 ... Q8CM25 36334624
    871 7yq7:C (1.9) BS15 GOL ? GO:0005737 ... Q8DIF8 36334624
    872 7yq7:O (1.9) BS02 GOL ? GO:0009654 ... P0A431 36334624
    873 7yq7:V (1.9) BS02 GOL ? GO:0005506 ... P0A386 36334624
    874 7yq7:v (1.9) BS02 GOL ? GO:0005506 ... P0A386 36334624
    875 8b9s:A (2.42) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    876 8b9s:B (2.42) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    877 8b9s:C (2.42) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    878 8b9s:E (2.42) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    879 8b9s:F (2.42) BS01 GOL ? GO:0052689 ... A0A1G7VV58 38012138
    880 8cwp:A (1.8) BS01 GOL 3.1.4.46 GO:0006071 ... Q06282 36065600
    881 8ghh:A (2.1) BS02 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    882 8ghh:A (2.1) BS03 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    883 8ghh:A (2.1) BS04 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    884 8ghh:A (2.1) BS05 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    885 8ghh:A (2.1) BS06 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    886 8ghh:A (2.1) BS07 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    887 8ghh:A (2.1) BS08 GOL 3.1.4.46 GO:0006629 ... A0A0D6HT57 37236358
    888 8gw5:A (1.8) BS01 GOL ? GO:0003697 ... A0A0D1JHQ1 37834349
    889 8gw5:A (1.8) BS02 GOL ? GO:0003697 ... A0A0D1JHQ1 37834349
    890 8hav:A (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    891 8haw:B (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    892 8j9f:A (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    893 8j9f:B (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    894 8j9f:D (2.85) BS01 GOL 3.2.1.21 GO:0004553 ... D6RVX0 37384427
    895 8pqo:C (2.3) BS01 GOL ? GO:0005548 ... N/A N/A
    896 8pqo:C (2.3) BS02 GOL ? GO:0005548 ... N/A N/A
    897 8qaw:A (1.55) BS04 GOL 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    898 8rqp:A (1.45) BS09 GOL ? GO:0009279 ... P18895 38585376
    899 8rqr:A (2.19) BS09 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    900 8rqr:A (2.19) BS10 GOL 2.3.1.269 GO:0005515 ... P23930 38585376
    901 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    902 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    903 8yk5:A (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    904 8yk5:B (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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