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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1qki:F (3.0) BS02 GOA 1.1.1.49 GO:0004345 ... P11413 10745013
    2 1qki:H (3.0) BS02 GOA 1.1.1.49 GO:0004345 ... P11413 10745013
    3 1ryi:A (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    4 1ryi:B (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    5 1ryi:C (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    6 1ryi:D (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    7 2h8p:C (2.25) BS01 GOA ? GO:0005249 ... P0A334 16939283
    8 2h8p:D (2.25) BS01 GOA N/A N/A N/A 16939283
    9 2hfe:C (2.25) BS01 GOA ? GO:0005249 ... P0A333 16939283
    10 2hfe:D (2.25) BS01 GOA N/A N/A N/A 16939283
    11 2hg5:C (2.75) BS01 GOA ? GO:0005249 ... P0A334 16939283
    12 2hg5:D (2.75) BS01 GOA N/A N/A N/A 16939283
    13 2o99:A (1.7) BS01 GOA ? N/A P16528 17426033 Manual survey: Kd=0.9+-2uM (17426033)
    14 2o99:B (1.7) BS01 GOA ? N/A P16528 17426033 Manual survey: Kd=0.9+-2uM (17426033)
    15 2o99:C (1.7) BS01 GOA ? N/A P16528 17426033 Manual survey: Kd=0.9+-2uM (17426033)
    16 2o99:D (1.7) BS01 GOA ? N/A P16528 17426033 Manual survey: Kd=0.9+-2uM (17426033)
    17 3if9:A (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    18 3if9:B (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    19 3if9:C (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    20 3if9:D (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    21 3l24:A (2.3) BS04 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0004063 ... Q44238 20000741
    22 3l24:B (2.3) BS03 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0004063 ... Q44238 20000741
    23 3l24:C (2.3) BS03 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0004063 ... Q44238 20000741
    24 3r3z:A (1.7) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 21510690
    25 3r3z:B (1.7) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 21510690
    26 3r3z:C (1.7) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 21510690
    27 3r3z:D (1.7) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 21510690
    28 4ais:A (2.0) BS01 GOA 3.2.1.169 N/A Q89ZI2 22692202
    29 4ais:B (2.0) BS01 GOA 3.2.1.169 N/A Q89ZI2 22692202
    30 4pc8:A (1.55) BS01 GOA 5.3.1.1 GO:0004807 ... P04789 27303904
    31 4ufv:C (1.75) BS04 GOA 2.3.1.97 GO:0004379 ... A5K1A2 26962430
    32 4zwo:A (2.141) BS05 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0016795 ... Q44238 26418828
    33 4zwo:B (2.141) BS03 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0016795 ... Q44238 26418828
    34 4zwu:B (2.2) BS01 GOA 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0016795 ... Q44238 26418828
    35 5ag0:A (1.75) BS02 GOA 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 N/A
    36 5da5:A (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    37 5da5:B (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    38 5da5:B (2.064) BS04 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    39 5da5:C (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    40 5da5:D (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    41 5da5:E (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    42 5da5:F (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    43 5da5:G (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    44 5da5:H (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    45 5da5:I (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    46 5da5:J (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    47 5da5:K (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    48 5da5:L (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    49 5da5:M (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    50 5da5:N (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    51 5da5:O (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    52 5da5:P (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    53 5da5:Q (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    54 5da5:R (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    55 5da5:S (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    56 5da5:T (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    57 5da5:U (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    58 5da5:V (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    59 5da5:W (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    60 5da5:X (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    61 5da5:Y (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    62 5da5:Z (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    63 5da5:a (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    64 5da5:b (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    65 5da5:c (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    66 5da5:d (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    67 5k3e:A (1.54) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 28104837
    68 5tws:A (1.85) BS05 GOA 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    69 5tyf:A (1.971) BS05 GOA 2.7.7.7 GO:0003677 ... Q9NP87 28811466
    70 5tyg:A (1.726) BS05 GOA 2.7.7.7 GO:0003677 ... Q9NP87 28811466
    71 5tyz:A (1.977) BS08 GOA 2.7.7.7 GO:0003677 ... Q9NP87 28811466
    72 5vfb:A (1.36) BS01 GOA 2.3.3.9 GO:0000287 ... Q9I636 N/A
    73 5vfb:B (1.36) BS01 GOA 2.3.3.9 GO:0000287 ... Q9I636 N/A
    74 6gmb:A (1.35) BS02 GOA 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 N/A
    75 6n2c:B (1.75) BS02 GOA ? GO:0046872 ... E4Q7C4 30478233
    76 6n63:A (1.72) BS01 GOA 1.16.3.1 GO:0004322 ... A0A0F5HNH9 31282860
    77 6nfp:D (1.7) BS03 GOA 3.5.3.1 GO:0000050 ... P39138 N/A
    78 6nfp:F (1.7) BS03 GOA 3.5.3.1 GO:0000050 ... P39138 N/A
    79 6qhw:A (1.718) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31515393
    80 6qi0:B (1.733) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31515393
    81 6qi2:A (1.73) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31515393
    82 6qi3:A (1.739) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31515393
    83 6qkt:A (1.512) BS01 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31188575
    84 6qku:A (1.511) BS03 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31188575
    85 6qkw:B (1.512) BS03 GOA 3.8.1.3 GO:0003824 ... Q6NAM1 31188575
    86 6vf1:A (1.68) BS06 GOA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    87 6vf6:A (1.69) BS07 GOA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    88 7eqk:A (2.04001) BS02 GOA ? GO:0046872 ... L7PIL3 N/A
    89 7f6s:A (1.8) BS01 GOA ? GO:0030288 ... Q53VZ2 34866608
    90 7f6x:B (2.16) BS01 GOA ? GO:0046872 ... L7PIL3 N/A
    91 7ksv:A (1.64) BS08 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    92 7ksy:A (1.577) BS05 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    93 7kt5:A (1.46) BS07 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    94 7kt6:A (1.87) BS08 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    95 7kt9:A (1.482) BS04 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    96 7ktg:A (1.445) BS06 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    97 7kth:A (1.476) BS04 GOA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    98 7q1o:A (2.65) BS04 GOA 3.1.1.8 GO:0001540 ... P06276 36696766
    99 7q1p:A (2.35) BS04 GOA 3.1.1.8 GO:0001540 ... P06276 36696766
    100 7yul:A (1.82) BS02 GOA ? GO:0003677 ... Q5SZJ8 37086783
    101 8hhq:A (2.4) BS01 GOA ? GO:0003677 ... P37231 36994595
    102 8hhq:B (2.4) BS01 GOA ? GO:0003677 ... P37231 36994595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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