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BioLiP
Download all results in tab-seperated text for 1213 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6gz3:Ct (3.6) BS04 GNP N/A GO:0003924 ... N/A 30517857
    802 6gz4:Ct (3.6) BS04 GNP N/A GO:0003924 ... N/A 30517857
    803 6gz5:Ct (3.5) BS03 GNP N/A GO:0003924 ... N/A 30517857
    804 6huf:A (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    805 6huf:B (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    806 6huf:C (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    807 6huf:D (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    808 6huf:E (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    809 6huf:F (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    810 6huf:G (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    811 6huf:H (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    812 6huf:I (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    813 6huf:J (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    814 6huf:K (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    815 6huf:L (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    816 6huf:M (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    817 6huf:N (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    818 6huf:O (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    819 6huf:P (2.82) BS02 GNP 3.6.5.2 GO:0003924 ... P51159 30950405
    820 6hz4:A (3.6) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    821 6hz4:B (3.6) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    822 6hz4:B (3.6) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    823 6hz4:C (3.6) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    824 6hz4:C (3.6) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    825 6hz4:D (3.6) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    826 6hz5:A (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    827 6hz5:B (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    828 6hz5:B (4.2) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    829 6hz5:C (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    830 6hz5:C (4.2) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    831 6hz5:D (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    832 6hz5:G (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    833 6hz5:H (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    834 6hz5:H (4.2) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    835 6hz5:I (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    836 6hz5:I (4.2) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    837 6hz5:J (4.2) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    838 6hz6:A (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    839 6hz6:B (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    840 6hz6:B (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    841 6hz6:C (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    842 6hz6:C (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    843 6hz6:D (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    844 6hz6:G (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    845 6hz6:H (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    846 6hz6:H (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    847 6hz6:I (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    848 6hz6:I (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    849 6hz6:J (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    850 6hz7:A (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    851 6hz7:B (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    852 6hz7:B (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    853 6hz7:C (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    854 6hz7:C (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    855 6hz7:D (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    856 6hz7:G (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    857 6hz7:H (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    858 6hz7:H (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    859 6hz7:I (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    860 6hz7:I (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    861 6hz7:J (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    862 6hz8:A (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    863 6hz8:B (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    864 6hz8:B (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    865 6hz8:C (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    866 6hz8:C (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    867 6hz8:D (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    868 6hz8:G (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    869 6hz8:H (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    870 6hz8:H (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    871 6hz8:I (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    872 6hz8:I (4.3) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    873 6hz8:J (4.3) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    874 6hz9:A (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    875 6hz9:B (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    876 6hz9:B (4.8) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    877 6hz9:C (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    878 6hz9:C (4.8) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    879 6hz9:D (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    880 6hz9:G (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    881 6hz9:H (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    882 6hz9:H (4.8) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    883 6hz9:I (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    884 6hz9:I (4.8) BS02 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    885 6hz9:J (4.8) BS01 GNP 3.1.21.- GO:0005524 ... P15005 31296862
    886 6jwp:A (3.2) BS01 GNP 3.6.5.- GO:0000329 ... Q00582 31579828
    887 6jwp:B (3.2) BS01 GNP 3.6.5.- GO:0000329 ... P53290 31579828
    888 6jwp:F (3.2) BS01 GNP 3.6.5.- GO:0000329 ... Q00582 31579828
    889 6k4g:A (2.7) BS01 GNP 2.7.1.149 GO:0005515 ... P78356 35504278
    890 6k4g:A (2.7) BS02 GNP 2.7.1.149 GO:0005515 ... P78356 35504278
    891 6k4g:B (2.7) BS01 GNP 2.7.1.149 GO:0005515 ... P78356 35504278
    892 6kyh:E (3.3) BS01 GNP 3.6.5.2 GO:0003924 ... Q61411 31879129
    893 6kyh:F (3.3) BS01 GNP 3.6.5.2 GO:0003924 ... Q61411 31879129
    894 6kyh:G (3.3) BS01 GNP 3.6.5.2 GO:0003924 ... Q61411 31879129
    895 6kyh:H (3.3) BS01 GNP 3.6.5.2 GO:0003924 ... Q61411 31879129
    896 6kyk:C (2.82) BS01 GNP 3.6.5.2 GO:0003924 ... P61224 31879129
    897 6kyk:D (2.82) BS01 GNP 3.6.5.2 GO:0003924 ... P61224 31879129
    898 6kyk:E (2.82) BS01 GNP 3.6.5.2 GO:0003924 ... P61224 31879129
    899 6kyk:F (2.82) BS01 GNP 3.6.5.2 GO:0003924 ... P61224 31879129
    900 6mbq:A (1.35) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31324887
    901 6mq9:A (1.86) BS01 GNP ? GO:0005525 ... Q8IYM1 32431830
    902 6mq9:A (1.86) BS03 GNP ? GO:0005525 ... Q8IYM1 32431830
    903 6mq9:B (1.86) BS01 GNP ? GO:0005525 ... Q8IYM1 32431830
    904 6mq9:C (1.86) BS01 GNP ? GO:0005525 ... Q8IYM1 32431830
    905 6mq9:D (1.86) BS01 GNP ? GO:0005525 ... Q8IYM1 32431830
    906 6mq9:D (1.86) BS02 GNP ? GO:0005525 ... Q8IYM1 32431830
    907 6mqb:A (2.12) BS01 GNP ? GO:0005525 ... Q8IYM1 32431830
    908 6mta:A (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    909 6mta:B (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    910 6mta:C (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    911 6nc4:A (1.6) BS01 GNP 3.6.5.4 GO:0005525 ... P10121 31520694
    912 6ntc:A (2.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32086379
    913 6ntd:A (3.15) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 32086379
    914 6o36:A (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    915 6o36:B (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    916 6o36:C (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    917 6o46:A (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    918 6o46:B (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    919 6o46:C (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    920 6ob2:A (2.845) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31611389
    921 6ob2:C (2.845) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31611389
    922 6ob3:A (2.1) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31611389
    923 6ob3:C (2.1) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 31611389
    924 6oq3:B (1.85) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 N/A
    925 6oq4:B (1.754) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 N/A
    926 6pc2:A (2.9) BS03 GNP ? GO:0016462 ... B5ZA44 31679177
    927 6pc2:A (2.9) BS04 GNP ? GO:0016462 ... B5ZA44 31679177
    928 6pc2:B (2.9) BS01 GNP ? GO:0016462 ... B5ZA44 31679177
    929 6pc2:B (2.9) BS02 GNP ? GO:0016462 ... B5ZA44 31679177
    930 6ppk:W (4.4) BS02 GNP ? GO:0003723 ... O31743 31665744
    931 6pts:B (-1.00) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 32414921
    932 6ptw:B (-1.00) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 32414921
    933 6rw4:X (2.97) BS03 GNP ? GO:0003723 ... P51398 32522994
    934 6rw5:7 (3.14) BS02 GNP ? GO:0003723 ... P46199 32522994
    935 6rw5:X (3.14) BS03 GNP ? GO:0003723 ... P51398 32522994
    936 6s5f:A (1.7) BS02 GNP ? GO:0003924 ... Q96DA2 N/A
    937 6stg:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P61006 32227113
    938 6stg:B (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P61006 32227113
    939 6sw9:7 (4.2) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 32029867
    940 6swc:7 (3.3) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 32029867
    941 6uka:A (2.4) BS01 GNP ? GO:0003924 ... P84095 32651375
    942 6ulg:G (3.31) BS01 GNP 3.6.5.- GO:0000287 ... Q9HB90 31704029
    943 6uzk:B (1.924) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 33977234
    944 6v65:C (2.763) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32697994
    945 6v6f:C (2.542) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32697994
    946 6v6m:A (1.39) BS01 GNP 3.6.5.2 GO:0000902 ... P61586 33497604
    947 6v94:A (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    948 6v9f:A (1.849) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    949 6v9j:A (1.76) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    950 6v9l:A (1.698) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    951 6v9m:A (1.648) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    952 6v9n:A (1.648) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 32673492
    953 6v9o:A (1.799) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 N/A
    954 6vc8:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 34983849
    955 6vc8:B (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 34983849
    956 6vc8:C (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 34983849
    957 6vjj:A (1.4) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    958 6wgn:A (1.601) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 33145412
    959 6wgn:B (1.601) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 33145412
    960 6wgn:C (1.601) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 33145412
    961 6x2m:A (2.351) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    962 6x2o:A (2.551) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    963 6x2p:A (2.401) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    964 6x2r:A (2.299) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    965 6x2s:A (2.496) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    966 6x2u:A (2.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    967 6x2v:A (2.822) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    968 6x2w:A (3.001) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    969 6x2x:A (2.458) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    970 6x2y:A (2.304) BS01 GNP 3.6.5.- GO:0000054 ... P62826 32520643
    971 6xgu:A (2.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    972 6xgv:A (2.11) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    973 6xha:A (2.87) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    974 6xhb:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    975 6xi7:A (1.95) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 33608534
    976 6xjp:A (2.802) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    977 6xjr:A (1.941) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    978 6xjs:A (1.942) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    979 6xjt:A (2.406) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    980 6xju:A (2.193) BS01 GNP 3.6.5.- GO:0000054 ... P62826 33451349
    981 6y32:A (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    982 6y32:A (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    983 6y32:B (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    984 6y32:B (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    985 6y32:C (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    986 6y32:C (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    987 6y32:D (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    988 6y32:D (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    989 6y32:E (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    990 6y32:E (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    991 6y32:F (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    992 6y32:F (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    993 6y32:G (2.6) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    994 6y32:G (2.6) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 33053321
    995 6y32:H (2.6) BS01 GNP ? GO:0005525 ... P08240 33053321
    996 6y32:H (2.6) BS02 GNP ? GO:0005525 ... P08240 33053321
    997 6yal:k (3.0) BS04 GNP ? GO:0000054 ... G1SG72 N/A
    998 6yal:k (3.0) BS05 GNP ? GO:0000054 ... G1SG72 N/A
    999 6yam:k (3.6) BS04 GNP N/A GO:0005524 ... N/A N/A
    1000 6yam:k (3.6) BS05 GNP N/A GO:0005524 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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