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BioLiP
Download all results in tab-seperated text for 1213 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4hax:A (2.28) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    402 4hay:A (2.3) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    403 4haz:A (1.9) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    404 4hb0:A (2.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    405 4hb2:A (1.8) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    406 4hb3:A (2.8) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    407 4hb4:A (2.05) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    408 4hdo:B (1.67) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 23814056
    409 4hdq:B (1.95) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 23814056
    410 4idn:A (2.252) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294 MOAD: Kd=5.77uM
    PDBbind: -logKd/Ki=5.24, Kd=5.77uM
    411 4idn:B (2.252) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294 MOAD: Kd=5.77uM
    PDBbind: -logKd/Ki=5.24, Kd=5.77uM
    412 4idp:A (2.587) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294
    413 4idp:B (2.587) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294
    414 4idp:C (2.587) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294
    415 4idp:D (2.587) BS01 GNP 3.6.5.- GO:0003924 ... Q8WXF7 23334294
    416 4jr7:A (1.48) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    417 4js0:A (1.9) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 24584464
    418 4jyb:A (2.1) BS01 GNP ? GO:0003924 ... C5AP93 23873214 PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    419 4jyb:B (2.1) BS01 GNP ? GO:0003924 ... C5AP93 23873214
    420 4kyi:B (3.075) BS01 GNP 3.6.5.2 GO:0003924 ... P51148 25114243
    421 4kyi:D (3.075) BS01 GNP 3.6.5.2 GO:0003924 ... P51148 25114243
    422 4kyi:F (3.075) BS01 GNP 3.6.5.2 GO:0003924 ... P51148 25114243
    423 4kyi:H (3.075) BS01 GNP 3.6.5.2 GO:0003924 ... P51148 25114243
    424 4l9w:A (1.952) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 24256730
    425 4lbv:A (2.03) BS01 GNP ? GO:0003746 ... P60338 23989163
    426 4lbw:A (1.741) BS01 GNP ? GO:0003746 ... P60338 23989163
    427 4lby:A (2.692) BS01 GNP ? GO:0003746 ... P60338 23989163
    428 4lbz:A (2.223) BS01 GNP ? GO:0003746 ... P60338 23989163
    429 4lc0:A (2.221) BS01 GNP ? GO:0003746 ... P60338 23989163
    430 4lfi:A (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    431 4lfi:B (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    432 4lhw:A (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 24072714
    433 4lhw:B (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 24072714
    434 4lhw:C (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 24072714
    435 4lhw:D (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 24072714
    436 4lhw:E (1.55) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 24072714
    437 4m9q:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    438 4m9q:B (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    439 4m9q:C (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    440 4nyi:Q (2.9612) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 24550516
    441 4nyj:Q (2.8522) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 24550516
    442 4nym:Q (3.5529) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 24550516
    443 4pc6:A (2.2) BS01 GNP ? GO:0003746 ... A0A0M3KKV1 26073967
    444 4pc6:B (2.2) BS01 GNP ? GO:0003746 ... A0A0M3KKV1 26073967
    445 4pc7:A (3.6003) BS01 GNP ? GO:0003723 ... P0CE47 26073967
    446 4q66:C (3.354) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 25203211
    447 4q66:F (3.354) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 25203211
    448 4q66:I (3.354) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 25203211
    449 4q66:L (3.354) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 25203211
    450 4rcz:A (1.429) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    451 4rcz:A (1.429) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    452 4rd2:A (1.585) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    453 4rd2:A (1.585) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    454 4rd4:A (1.3) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    455 4rd4:A (1.3) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    456 4rke:A (2.0006) BS01 GNP 3.6.5.2 GO:0003924 ... O18333 25615965
    457 4rkf:A (1.5) BS01 GNP ? GO:0003924 ... P25228 25615965
    458 4rkf:B (1.5) BS01 GNP ? GO:0003924 ... P25228 25615965
    459 4rsg:A (1.907) BS01 GNP 3.6.5.2 N/A P01112 26515069
    460 4u5x:A (1.9) BS01 GNP ? GO:0003924 ... Q9SSX0 25128531
    461 4uj3:A (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    462 4uj3:D (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    463 4uj3:G (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    464 4uj3:J (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    465 4uj3:M (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    466 4uj3:P (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    467 4uj3:S (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    468 4uj3:V (3.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    469 4uj4:A (4.2) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    470 4uj4:D (4.2) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    471 4uj4:G (4.2) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    472 4uj4:J (4.2) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    473 4uj5:A (2.604) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    474 4uj5:B (2.604) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 26258637
    475 4ujc:AB (9.5) BS04 GNP ? GO:0003924 ... G1TRL5 25064512
    476 4ujd:BB (8.9) BS04 GNP ? GO:0003924 ... G1TRL5 25064512
    477 4v85:AW (3.2) BS04 GNP ? GO:0003924 ... P0A7I4 22187675
    478 4v89:AW (3.7) BS03 GNP ? GO:0003924 ... P0A7I4 22187675
    479 4v9j:AY (3.86) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    480 4v9j:CY (3.86) BS04 GNP ? GO:0003746 ... Q5SHN5 23812722
    481 4v9k:AY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    482 4v9k:CY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    483 4wl8:A (1.61) BS01 GNP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    484 4wvf:A (1.8) BS01 GNP 3.6.5.- GO:0000054 ... P62826 25706475
    485 4xvq:A (1.887) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 25999467
    486 4xvr:A (2.031) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 25999467
    487 4yc7:A (2.5) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 25963737
    488 4ydh:B (3.8) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 25963737
    489 4ydh:D (3.8) BS01 GNP 3.6.5.2 GO:0000139 ... P60953 25963737
    490 4z51:A (1.86) BS01 GNP ? GO:0005525 ... Q9UH03 N/A
    491 4zi2:A (2.2) BS01 GNP ? GO:0000139 ... Q9WUL7 26455799
    492 4zi2:B (2.2) BS01 GNP ? GO:0000139 ... Q9WUL7 26455799
    493 4zi3:A (2.0) BS01 GNP ? GO:0000139 ... Q9WUL7 26455799
    494 4zi3:B (2.0) BS01 GNP ? GO:0000139 ... Q9WUL7 26455799
    495 4zu9:A (3.191) BS01 GNP ? GO:0001514 ... O67141 26304550
    496 5ady:6 (4.5) BS02 GNP ? GO:0003924 ... P25519 26458047
    497 5axn:A (2.703) BS04 GNP ? GO:0000287 ... A0A1C7D1G9 27051866
    498 5axn:B (2.703) BS02 GNP ? GO:0000287 ... A0A1C7D1G9 27051866
    499 5axn:B (2.703) BS03 GNP ? GO:0000287 ... A0A1C7D1G9 27051866
    500 5b2z:A (1.56) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    501 5b30:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    502 5cb2:A (2.9) BS02 GNP 3.6.5.- GO:0005525 ... Q9C0L9 26370501
    503 5clq:A (3.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26272610
    504 5clq:C (3.2) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26272610
    505 5de3:A (1.417) BS01 GNP ? GO:0000139 ... A8ISN6 N/A
    506 5dh9:A (2.55) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26349033
    507 5dha:A (2.95) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26349033
    508 5dhf:A (2.285) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26349033
    509 5di3:A (2.5) BS01 GNP ? GO:0000139 ... A8ISN6 26551564
    510 5di3:B (2.5) BS01 GNP ? GO:0003924 ... A8INQ0 26551564
    511 5di9:A (2.28) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26349033
    512 5dif:A (2.092) BS01 GNP 3.6.5.- GO:0000054 ... P62826 26349033
    513 5ee9:A (2.75) BS01 GNP 3.6.5.- GO:0003924 ... Q6Z1J6 26912459
    514 5fph:A (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    515 5fph:B (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    516 5fph:C (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    517 5fph:E (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    518 5fph:F (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    519 5fph:G (3.2) BS01 GNP 3.6.5.- GO:0003924 ... Q9QZ85 26934976
    520 5gad:i (3.7) BS04 GNP 3.6.5.4 GO:0003723 ... P0AGD7 26804923
    521 5gad:l (3.7) BS02 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    522 5gad:l (3.7) BS03 GNP 3.6.5.4 GO:0003924 ... P10121 26804923
    523 5gaf:i (4.3) BS04 GNP 3.6.5.4 GO:0003924 ... P0AGD7 26804923
    524 5iqa:A (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    525 5iqa:B (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    526 5iqa:C (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    527 5iqa:D (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    528 5iqb:A (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    529 5iqb:B (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    530 5iqb:C (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    531 5iqb:D (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    532 5iqc:A (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    533 5iqc:B (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    534 5iqc:C (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    535 5iqc:D (2.3) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    536 5iqd:A (2.2) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    537 5iqd:B (2.2) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    538 5iqd:C (2.2) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    539 5iqd:D (2.2) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    540 5iqe:A (2.5) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    541 5iqe:B (2.5) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    542 5iqe:C (2.5) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    543 5iqe:D (2.5) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    544 5iqh:A (2.25) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    545 5iqh:B (2.25) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    546 5iqh:C (2.25) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    547 5iqh:D (2.25) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    548 5iqi:A (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    549 5iqi:B (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    550 5iqi:C (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    551 5iqi:D (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    552 5izm:A (3.4) BS02 GNP 3.6.5.- GO:0000049 ... P57772 27708257 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    553 5izm:B (3.4) BS02 GNP 3.6.5.- GO:0000049 ... P57772 27708257
    554 5jb3:7 (5.34) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 27819266
    555 5jbh:7 (5.34) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 27819266
    556 5jlj:A (2.5) BS01 GNP 3.6.5.- GO:0000054 ... P62826 27323910
    557 5kho:C (2.78) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 27839947
    558 5kho:D (2.78) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 27839947
    559 5l3q:A (3.2) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    560 5l3q:A (3.2) BS03 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    561 5l3q:B (3.2) BS01 GNP ? GO:0003723 ... P08240 27241309
    562 5l3q:B (3.2) BS03 GNP ? GO:0003723 ... P08240 27241309
    563 5l3q:C (3.2) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    564 5l3q:C (3.2) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    565 5l3q:D (3.2) BS01 GNP ? GO:0003723 ... P08240 27241309
    566 5l3q:D (3.2) BS03 GNP ? GO:0003723 ... P08240 27241309
    567 5l3s:A (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    568 5l3s:B (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    569 5l3s:B (1.9) BS02 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    570 5l3s:C (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    571 5l3s:C (1.9) BS03 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    572 5l3s:D (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    573 5l3s:E (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    574 5l3s:F (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    575 5l3s:G (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    576 5l3s:G (1.9) BS03 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    577 5l3s:H (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    578 5l3s:H (1.9) BS02 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    579 5lpn:A (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P61026 27552051
    580 5lpn:C (2.8) BS02 GNP 3.6.5.2 GO:0003924 ... P61026 27552051
    581 5lzb:z (5.3) BS05 GNP ? GO:0000049 ... P14081 27842381
    582 5lzc:z (4.8) BS05 GNP ? GO:0000049 ... P14081 27842381
    583 5lzd:z (3.4) BS06 GNP ? GO:0000049 ... P14081 27842381
    584 5m1j:A6 (3.3) BS02 GNP 3.6.5.- GO:0003746 ... P32769 27995908
    585 5m7h:A (3.15) BS01 GNP ? GO:0005525 ... P50743 N/A
    586 5niy:A (1.7) BS01 GNP 3.6.5.4 GO:0005525 ... P10121 30146170 PDBbind: -logKd/Ki=4.22, Kd=60uM
    587 5no2:Z (5.16) BS03 GNP 3.6.1.- GO:0003924 ... P39286 28482099
    588 5no3:Z (5.16) BS03 GNP 3.6.1.- GO:0003924 ... P39286 28482099
    589 5no4:Z (5.16) BS03 GNP 3.6.1.- GO:0003924 ... P39286 28482099
    590 5ocg:A (1.48) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 30093669
    591 5oco:A (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    592 5oco:B (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    593 5oco:C (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    594 5oco:D (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    595 5oco:E (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    596 5oco:F (1.66) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    597 5oct:A (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    598 5oct:B (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    599 5oct:C (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669
    600 5oct:D (2.07) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 30093669

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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