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BioLiP
Download all results in tab-seperated text for 1213 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 2rge:A (1.4) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 18073111
    202 2rgg:A (1.45) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 18073111
    203 2wic:A (2.05) BS01 GNP ? GO:0005525 ... A6TF32 20123128 PDBbind: -logKd/Ki=5.39, Kd=4.1uM
    204 2wji:A (1.903) BS01 GNP ? GO:0005525 ... Q57986 19615379 PDBbind: -logKd/Ki=5.02, Kd=9.6uM
    205 2wji:B (1.903) BS01 GNP ? GO:0005525 ... Q57986 19615379
    206 2y8e:A (1.39) BS01 GNP ? GO:0003924 ... O18334 21795785
    207 2y8e:B (1.39) BS01 GNP ? GO:0003924 ... O18334 21795785
    208 2ywf:A (2.24) BS01 GNP 3.6.5.n1 GO:0003746 ... O67618 N/A
    209 2zgz:A (2.25) BS02 GNP ? GO:0030541 ... P11904 18188150
    210 2zgz:B (2.25) BS02 GNP ? GO:0030541 ... P11904 18188150
    211 3a1u:A (1.8) BS01 GNP ? GO:0005525 ... Q9WXQ8 19733088
    212 3a1u:B (1.8) BS01 GNP ? GO:0005525 ... Q9WXQ8 19733088
    213 3a58:B (2.6) BS01 GNP 3.6.5.2 GO:0000131 ... P06780 20062059
    214 3a58:D (2.6) BS01 GNP 3.6.5.2 GO:0000131 ... P06780 20062059
    215 3a58:F (2.6) BS01 GNP 3.6.5.2 GO:0000131 ... P06780 20062059
    216 3b1x:A (2.61) BS01 GNP ? GO:0005525 ... Q5M586 22101824
    217 3b1x:B (2.61) BS01 GNP ? GO:0005525 ... Q5M586 22101824
    218 3bb1:A (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    219 3bb1:A (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    220 3bb1:B (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    221 3bb1:B (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    222 3bb1:C (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    223 3bb1:C (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    224 3bb1:D (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    225 3bb1:D (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    226 3bb1:E (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    227 3bb1:E (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    228 3bb1:F (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    229 3bb1:F (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    230 3bb1:G (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    231 3bb1:G (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    232 3bb1:H (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    233 3bb1:H (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179
    234 3bb4:A (2.85) BS01 GNP 3.6.5.- GO:0005525 ... O23680 18400179
    235 3bc1:A (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... Q9ERI2 18940603
    236 3bc1:E (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... Q9ERI2 18940603
    237 3bh6:A (2.6) BS02 GNP ? GO:0003924 ... Q9WUL7 18376416
    238 3bh6:B (2.6) BS01 GNP ? GO:0000287 ... O75695 18376416
    239 3c5h:A (1.8) BS02 GNP ? GO:0003924 ... Q9NRY4 N/A
    240 3cnl:A (2.0) BS01 GNP ? GO:0003924 ... Q9WZM6 18536017
    241 3ddc:A (1.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 18596699
    242 3e5h:A (1.499) BS02 GNP ? GO:0003924 ... P51157 19026641
    243 3eg5:A (2.7) BS01 GNP 3.6.5.2 GO:0000139 ... P60766 18829452
    244 3eg5:C (2.7) BS01 GNP 3.6.5.2 GO:0000139 ... P60766 18829452
    245 3ftq:A (2.9) BS02 GNP ? GO:0005525 ... P42208 19805342 PDBbind: -logKd/Ki=5.33, Kd=4.7uM
    246 3ftq:B (2.9) BS02 GNP ? GO:0005525 ... P42208 19805342
    247 3ftq:C (2.9) BS02 GNP ? GO:0005525 ... P42208 19805342
    248 3ftq:D (2.9) BS02 GNP ? GO:0005525 ... P42208 19805342
    249 3gft:A (2.27) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    250 3gft:B (2.27) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    251 3gft:C (2.27) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    252 3gft:D (2.27) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    253 3gft:E (2.27) BS02 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    254 3gft:F (2.27) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 N/A
    255 3i3s:R (1.36) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 19966803
    256 3iev:A (1.9) BS03 GNP ? GO:0000028 ... O67800 19706445
    257 3jce:x (3.2) BS04 GNP 3.6.5.n1 GO:0003746 ... P60785 26809121
    258 3jcj:f (3.7) BS04 GNP ? GO:0003743 ... P0A705 26973877
    259 3jcn:b (4.6) BS04 GNP ? GO:0003743 ... P0A705 26973877
    260 3k8y:A (1.3) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20194776
    261 3k9l:A (1.8) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 N/A
    262 3k9l:B (1.8) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 N/A
    263 3k9l:C (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 N/A
    264 3k9n:A (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20194776
    265 3kkm:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20479006
    266 3kkn:A (2.09) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20479006
    267 3kko:A (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 20479006
    268 3kko:B (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 20479006
    269 3kko:P (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 20479006
    270 3kkp:A (1.35) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 20479006
    271 3l8y:A (2.02) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20401883
    272 3l8z:A (1.44) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20401883
    273 3law:A (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... P51149 20028791
    274 3law:B (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... P51149 20028791
    275 3law:C (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... P51149 20028791
    276 3law:D (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... P51149 20028791
    277 3law:E (2.8) BS02 GNP 3.6.5.2 GO:0000045 ... P51149 20028791
    278 3lbh:A (1.85) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20194776
    279 3lbi:A (2.087) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20194776
    280 3lbn:A (1.862) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 20194776
    281 3llu:A (1.4) BS01 GNP 3.6.5.- GO:0005525 ... Q9HB90 N/A
    282 3nkv:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    283 3nkv:B (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    284 3oes:A (2.301) BS02 GNP ? GO:0003924 ... Q8TAI7 N/A
    285 3oiu:A (1.32) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21098031
    286 3oiv:A (1.837) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21098031
    287 3oiw:A (1.3) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21098031
    288 3pir:A (2.75) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 N/A
    289 3pit:A (1.55) BS01 GNP 3.6.5.2 GO:0003924 ... O08989 N/A
    290 3q3j:B (1.971) BS01 GNP ? GO:0003924 ... Q92730 N/A
    291 3q72:A (1.655) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.80, Kd=1574nM
    292 3q72:B (1.655) BS01 GNP ? GO:0003924 ... P55042 21903096
    293 3q7p:A (2.5) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.80, Kd=1574nM
    294 3q7p:B (2.5) BS01 GNP ? GO:0003924 ... P55042 21903096
    295 3q7q:A (2.3) BS01 GNP ? GO:0003924 ... P55042 21903096 PDBbind: -logKd/Ki=5.65, Kd=2256nM
    296 3q7q:B (2.3) BS01 GNP ? GO:0003924 ... P55042 21903096
    297 3q85:A (1.757) BS01 GNP ? GO:0003924 ... Q8VEL9 21903096
    298 3q85:B (1.757) BS01 GNP ? GO:0003924 ... Q8VEL9 21903096
    299 3qbt:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 21378754
    300 3qbt:C (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 21378754
    301 3qbt:E (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 21378754
    302 3qbt:G (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 21378754
    303 3qsy:A (3.2) BS02 GNP 3.6.5.3 GO:0000049 ... Q980A5 23291527
    304 3r7w:A (2.773) BS01 GNP 3.6.5.- GO:0000329 ... Q00582 21816923
    305 3r7w:B (2.773) BS01 GNP 3.6.5.- GO:0000329 ... P53290 21816923
    306 3r7w:C (2.773) BS01 GNP 3.6.5.- GO:0000329 ... Q00582 21816923
    307 3r7w:D (2.773) BS01 GNP 3.6.5.- GO:0000329 ... P53290 21816923
    308 3r9w:A (2.05) BS03 GNP ? GO:0000028 ... O67800 21646538
    309 3r9x:A (2.8) BS03 GNP ? GO:0000028 ... O67800 21646538
    310 3rab:A (2.0) BS02 GNP ? GO:0003924 ... P63012 10196122
    311 3rry:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    312 3rrz:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    313 3rs0:A (1.4) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    314 3rs2:A (1.836) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    315 3rs3:A (1.52) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    316 3rs4:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    317 3rs5:A (1.68) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    318 3rs7:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    319 3rsl:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    320 3rso:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21945529
    321 3rwm:B (2.0) BS01 GNP ? GO:0003924 ... P51996 22024479
    322 3rwm:B (2.0) BS03 GNP ? GO:0003924 ... P51996 22024479
    323 3ryt:C (3.582) BS02 GNP 3.6.5.2 GO:0001764 ... P63000 22253263
    324 3sbd:A (2.1) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 22842228
    325 3sbd:B (2.1) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 22842228
    326 3sbe:A (2.6) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 22842228
    327 3sea:B (2.0) BS02 GNP 3.6.5.- GO:0000139 ... Q15382 22819219
    328 3sjz:A (2.8) BS02 GNP 3.6.5.3 GO:0000049 ... Q980A5 N/A
    329 3su8:A (3.2) BS02 GNP 3.6.5.2 GO:0001764 ... P63000 21912513
    330 3sua:A (4.39) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 21912513
    331 3sua:B (4.39) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 21912513
    332 3sua:C (4.39) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 21912513
    333 3t1q:A (2.7) BS01 GNP 3.6.5.2 GO:0003924 ... Q5SJ82 21847100
    334 3tgp:A (1.3075) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 21918110
    335 3th5:A (2.3) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 22842228
    336 3th5:B (2.3) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 22842228
    337 3tjz:A (2.9) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 22304919
    338 3tjz:D (2.9) BS01 GNP 3.6.5.2 GO:0003924 ... P11076 22304919
    339 3tnf:A (2.5) BS02 GNP 3.6.5.2 GO:0003924 ... P61006 22011575
    340 3tso:A (1.8) BS02 GNP ? GO:0003924 ... P57735 N/A
    341 3tso:B (1.8) BS02 GNP ? GO:0003924 ... P57735 N/A
    342 3v11:A (5.0) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 22447243
    343 3v4f:A (1.391) BS04 GNP 3.6.5.2 GO:0003924 ... P20171 22845804
    344 3wnb:A (1.7) BS01 GNP ? GO:0001514 ... Q8PXB3 25618148
    345 3x04:A (2.6) BS01 GNP 2.7.1.149 GO:0005515 ... P78356 26774281
    346 3x04:A (2.6) BS02 GNP 2.7.1.149 GO:0005515 ... P78356 26774281
    347 3x04:A (2.6) BS03 GNP 2.7.1.149 GO:0005515 ... P78356 26774281
    348 3x04:B (2.6) BS01 GNP 2.7.1.149 GO:0005515 ... P78356 26774281
    349 3x1x:A (1.0) BS01 GNP 3.6.5.2 GO:0003924 ... Q62636 25935485
    350 3x1y:A (1.168) BS01 GNP 3.6.5.2 GO:0003924 ... Q62636 25935485
    351 3x1z:A (1.25) BS01 GNP 3.6.5.2 GO:0003924 ... Q62636 25935485
    352 3x1z:B (1.25) BS01 GNP 3.6.5.2 GO:0003924 ... Q62636 25935485
    353 3zjc:A (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188 PDBbind: -logKd/Ki=5.05, Kd=9uM
    354 3zjc:B (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188
    355 3zjc:C (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188
    356 3zjc:D (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188
    357 3zjc:E (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188
    358 3zjc:F (3.15) BS02 GNP ? GO:0003924 ... Q8NHV1 23454188
    359 421p:A (2.2) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 2199064
    360 4acb:A (3.34) BS01 GNP ? GO:0001514 ... Q8J307 15616587
    361 4bas:A (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... C9ZVV9 23184293
    362 4bqz:A (2.05) BS01 GNP 3.6.1.- GO:0016787 ... O35795 23830739
    363 4brg:A (1.45) BS01 GNP 3.6.1.5 GO:0000166 ... Q5ZUA2 23830739
    364 4brg:B (1.45) BS01 GNP 3.6.1.5 GO:0000166 ... Q5ZUA2 23830739
    365 4bzi:B (23.0) BS01 GNP 3.6.5.- GO:0000139 ... P20606 24062940
    366 4bzi:J (23.0) BS01 GNP 3.6.5.- GO:0000139 ... P20606 24062940
    367 4bzi:K (23.0) BS01 GNP 3.6.5.- GO:0000139 ... P20606 24062940
    368 4c4p:A (2.0) BS01 GNP 3.6.5.2 GO:0003924 ... P62491 24056041
    369 4crn:P (9.1) BS01 GNP 3.6.5.- GO:0000288 ... P05453 25001285
    370 4dcn:A (3.01) BS02 GNP ? GO:0000139 ... P40616 22679020
    371 4dcn:B (3.01) BS02 GNP ? GO:0000139 ... P40616 22679020
    372 4dlr:A (1.319) BS05 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    373 4dls:A (1.819) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    374 4dlt:A (1.699) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    375 4dlu:A (1.6) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    376 4dlv:A (1.572) BS03 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    377 4dlw:A (1.72) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    378 4dlx:A (1.731) BS04 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    379 4dly:A (1.57) BS04 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    380 4dlz:A (1.662) BS05 GNP 3.6.5.2 GO:0003924 ... P01112 22845804
    381 4efl:A (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22584058
    382 4efm:A (1.9) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22584058
    383 4efn:A (2.3) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 22584058
    384 4f38:A (2.8) BS04 GNP 3.6.5.2 GO:0000902 ... Q9QUI0 22628549
    385 4g0n:A (2.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 25684575
    386 4g3x:A (3.25) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 25684575
    387 4gmx:A (2.1) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23034282
    388 4goj:A (2.1) BS01 GNP ? GO:0000139 ... Q9WUL7 22960633
    389 4goj:B (2.1) BS01 GNP ? GO:0000139 ... Q9WUL7 22960633
    390 4gok:A (2.6) BS01 GNP ? GO:0003924 ... Q9D0J4 22960633
    391 4gok:B (2.6) BS01 GNP ? GO:0003924 ... Q9D0J4 22960633
    392 4gpt:A (2.22) BS01 GNP 3.6.5.- GO:0000054 ... P62826 22847027
    393 4gzl:A (2.0) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 23284172
    394 4gzl:B (2.0) BS01 GNP 3.6.5.2 GO:0001764 ... P63000 23284172
    395 4h1v:A (2.3) BS01 GNP 3.6.5.5 GO:0003924 ... O00429 23977156
    396 4h9g:A (1.93) BS01 GNP 3.6.5.3 GO:0003746 ... P60338 23989163
    397 4hat:A (1.78) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    398 4hau:A (2.0) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    399 4hav:A (2.0) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    400 4haw:A (1.9) BS01 GNP 3.6.5.- GO:0000054 ... P62826 23297231
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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