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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a4r:B (2.5) BS01 GNH 3.6.5.2 GO:0000139 ... P60953 10211824 MOAD: Kd=0.22uM
    PDBbind: -logKd/Ki=6.66, Kd=0.22uM
    2 1hon:A (2.3) BS01 GNH 6.3.4.4 GO:0000166 ... P0A7D4 8663109
    3 1hoo:A (2.3) BS01 GNH 6.3.4.4 GO:0000166 ... P0A7D4 8663109
    4 2efe:A (2.08) BS01 GNH ? GO:0005085 ... Q9LT31 20833725
    5 2efe:B (2.08) BS01 GNH ? GO:0003924 ... Q9SN68 20833725
    6 2efe:C (2.08) BS01 GNH ? GO:0005085 ... Q9LT31 20833725
    7 2efe:D (2.08) BS01 GNH ? GO:0003924 ... Q9SN68 20833725
    8 3b1y:A (2.5) BS01 GNH ? GO:0005525 ... Q5M586 22101824
    9 3w6n:A (2.0) BS01 GNH 3.6.5.5 GO:0003924 ... O00429 N/A
    10 3w6n:B (2.0) BS01 GNH 3.6.5.5 GO:0003924 ... O00429 N/A
    11 4r98:A (2.22) BS01 GNH ? GO:0005525 ... P33650 25517170
    12 4r98:B (2.22) BS01 GNH ? GO:0005525 ... P33650 25517170
    13 6jq8:A (1.546) BS01 GNH ? GO:0005525 ... Q8GJ95 31906195
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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