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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d8c:A (2.0) BS03 GLV 2.3.3.9 GO:0000287 ... P37330 10715138
    2 1f8i:A (2.25) BS01 GLV 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    3 1f8i:B (2.25) BS01 GLV 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    4 1f8i:C (2.25) BS01 GLV 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    5 1f8i:D (2.25) BS01 GLV 4.1.3.1 GO:0003824 ... P9WKK7 10932251
    6 1n8i:A (2.1) BS02 GLV 2.3.3.9 GO:0000287 ... P9WK17 12393860
    7 1n8w:B (2.7) BS02 GLV 2.3.3.9 GO:0000287 ... P9WK17 12393860
    8 1nxj:A (1.9) BS01 GLV 4.1.1.112
    4.1.3.17    		 GO:0008428 ... P9WGY3 12837779
    9 1nxj:B (1.9) BS01 GLV 4.1.1.112
    4.1.3.17    		 GO:0008428 ... P9WGY3 12837779
    10 1nxj:C (1.9) BS01 GLV 4.1.1.112
    4.1.3.17    		 GO:0008428 ... P9WGY3 12837779
    11 2hui:A (1.75) BS01 GLV 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    12 2hui:B (1.75) BS01 GLV 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    13 2rdu:A (1.65) BS02 GLV 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 18215067
    14 3oyx:A (2.51) BS01 GLV 2.3.3.9 GO:0000287 ... D4GTL2 21569248
    15 3pug:A (2.7) BS01 GLV 2.3.3.9 GO:0000287 ... D4GTL2 21569248
    16 4fju:A (1.771) BS02 GLV N/A GO:0016491 ... N/A 23284870
    17 4lh0:A (1.674) BS01 GLV 1.2.1.88 GO:0003842 ... Q8CHT0 23928095
    18 4lh0:B (1.674) BS01 GLV 1.2.1.88 GO:0003842 ... Q8CHT0 23928095
    19 4pxe:A (1.449) BS03 GLV 3.5.1.116 GO:0000256 ... Q8VXY9 25020232
    20 4pxe:A (1.449) BS04 GLV 3.5.1.116 GO:0000256 ... Q8VXY9 25020232
    21 4pxe:B (1.449) BS01 GLV 3.5.1.116 GO:0000256 ... Q8VXY9 25020232
    22 4pxe:B (1.449) BS04 GLV 3.5.1.116 GO:0000256 ... Q8VXY9 25020232
    23 5aov:A (1.4) BS02 GLV 1.1.1.26 GO:0005737 ... Q8U3Y2 26865263
    24 5aov:A (1.4) BS03 GLV 1.1.1.26 GO:0005737 ... Q8U3Y2 26865263
    25 5cc5:A (2.14) BS02 GLV 2.3.3.9 GO:0000287 ... P9WK17 N/A
    26 5e9g:A (2.1) BS01 GLV 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    27 5e9g:B (2.1) BS01 GLV 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    28 5e9g:C (2.1) BS01 GLV 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    29 5e9g:D (2.1) BS01 GLV 4.1.3.1
    4.1.3.30    		 GO:0003824 ... P0CT06 27016285
    30 5tao:A (2.1) BS01 GLV 2.3.3.9 GO:0000287 ... D4GTL2 N/A
    31 5tao:A (2.1) BS02 GLV 2.3.3.9 GO:0000287 ... D4GTL2 N/A
    32 5tao:A (2.1) BS03 GLV 2.3.3.9 GO:0000287 ... D4GTL2 N/A
    33 5xr3:E (3.01) BS01 GLV 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0005737 ... P64312 29046369
    34 6g1o:A (1.882) BS02 GLV 4.1.3.1 GO:0003824 ... Q9I0K4 30030382
    35 7rb1:D (1.9) BS01 GLV 4.1.3.1 GO:0003824 ... P9WKK7 34664502
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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