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BioLiP
Download all results in tab-seperated text for 1135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 8ece:D (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    1002 8fpc:A (2.78) BS01 GLU ? GO:0005216 ... P19491 38409505
    1003 8fpc:B (2.78) BS01 GLU ? GO:0005216 ... P19491 38409505
    1004 8fpc:C (2.78) BS02 GLU ? GO:0005216 ... P19491 38409505
    1005 8fpc:D (2.78) BS02 GLU ? GO:0005216 ... P19491 38409505
    1006 8fph:A (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1007 8fph:B (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1008 8fph:C (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1009 8fph:D (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1010 8fpv:A (3.08) BS01 GLU ? GO:0005216 ... P19491 38409505
    1011 8fpv:B (3.08) BS01 GLU ? GO:0005216 ... P19491 38409505
    1012 8fpv:C (3.08) BS02 GLU ? GO:0005216 ... P19491 38409505
    1013 8fpv:D (3.08) BS02 GLU ? GO:0005216 ... P19491 38409505
    1014 8fpy:A (2.98) BS01 GLU ? GO:0005216 ... P19491 38409505
    1015 8fpy:B (2.98) BS01 GLU ? GO:0005216 ... P19491 38409505
    1016 8fpy:C (2.98) BS02 GLU ? GO:0005216 ... P19491 38409505
    1017 8fpy:D (2.98) BS02 GLU ? GO:0005216 ... P19491 38409505
    1018 8fpz:A (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1019 8fpz:B (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1020 8fpz:C (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1021 8fpz:D (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1022 8fq2:A (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1023 8fq2:B (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1024 8fq2:C (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1025 8fq2:D (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1026 8fq3:A (3.17) BS02 GLU ? GO:0005216 ... P19491 38409505
    1027 8fq3:B (3.17) BS01 GLU ? GO:0005216 ... P19491 38409505
    1028 8fq3:C (3.17) BS02 GLU ? GO:0005216 ... P19491 38409505
    1029 8fq3:D (3.17) BS01 GLU ? GO:0005216 ... P19491 38409505
    1030 8fq6:A (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1031 8fq6:B (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1032 8fq6:C (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1033 8fq6:D (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1034 8fq8:A (3.11) BS01 GLU ? GO:0005216 ... P19491 38409505
    1035 8fq8:B (3.11) BS01 GLU ? GO:0005216 ... P19491 38409505
    1036 8fq8:C (3.11) BS02 GLU ? GO:0005216 ... P19491 38409505
    1037 8fq8:D (3.11) BS02 GLU ? GO:0005216 ... P19491 38409505
    1038 8fqa:A (3.35) BS01 GLU ? GO:0005216 ... P19491 38409505
    1039 8fqa:B (3.35) BS01 GLU ? GO:0005216 ... P19491 38409505
    1040 8fqa:C (3.35) BS02 GLU ? GO:0005216 ... P19491 38409505
    1041 8fqa:D (3.35) BS01 GLU ? GO:0005216 ... P19491 38409505
    1042 8fqd:A (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1043 8fqd:B (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1044 8fqd:C (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1045 8fqd:D (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1046 8fqe:A (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1047 8fqe:B (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1048 8fqe:C (3.14) BS02 GLU ? GO:0005216 ... P19491 38409505
    1049 8fqe:D (3.14) BS01 GLU ? GO:0005216 ... P19491 38409505
    1050 8fqg:A (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1051 8fqg:B (3.01) BS01 GLU ? GO:0005216 ... P19491 38409505
    1052 8fqg:C (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1053 8fqg:D (3.01) BS02 GLU ? GO:0005216 ... P19491 38409505
    1054 8fqh:A (3.43) BS01 GLU ? GO:0005216 ... P19491 38409505
    1055 8fqh:B (3.43) BS01 GLU ? GO:0005216 ... P19491 38409505
    1056 8fqh:C (3.43) BS02 GLU ? GO:0005216 ... P19491 38409505
    1057 8fqh:D (3.43) BS03 GLU ? GO:0005216 ... P19491 38409505
    1058 8fr0:A (3.04) BS01 GLU ? GO:0005216 ... P19491 38409505
    1059 8fr0:B (3.04) BS01 GLU ? GO:0005216 ... P19491 38409505
    1060 8fr0:C (3.04) BS02 GLU ? GO:0005216 ... P19491 38409505
    1061 8fr0:D (3.04) BS02 GLU ? GO:0005216 ... P19491 38409505
    1062 8gsj:A (2.1) BS02 GLU ? GO:0008013 ... P25054 N/A
    1063 8hq6:C (2.03) BS01 GLU ? GO:0000055 ... P30822 37595020
    1064 8i9i:A (3.3) BS01 GLU 6.1.1.17 GO:0000049 ... P04805 N/A
    1065 8i9i:B (3.3) BS01 GLU 6.1.1.17 GO:0000049 ... P04805 N/A
    1066 8jd0:3 (3.3) BS01 GLU 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    1067 8jd1:2 (3.7) BS01 GLU 5.2.1.8 GO:0000413 ... P62942
    Q14416
    37286794
    1068 8jd1:3 (3.7) BS01 GLU 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    1069 8jd2:2 (2.8) BS01 GLU 5.2.1.8 GO:0000413 ... P62942
    Q14416
    37286794
    1070 8jd2:3 (2.8) BS01 GLU 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832
    37286794
    1071 8jd3:2 (3.3) BS02 GLU ? GO:0001641 ... Q14416 37286794
    1072 8jd3:3 (3.3) BS01 GLU ? GO:0001641 ... Q14832 37286794
    1073 8jd4:2 (2.9) BS01 GLU 5.2.1.8 GO:0000413 ... P62942
    Q14416
    37286794
    1074 8jd4:4 (2.9) BS01 GLU 2.7.11.1 GO:0001640 ... A0A8V8TRG9
    Q14833
    37286794
    1075 8jd5:2 (3.6) BS02 GLU ? GO:0001641 ... Q14416 37286794
    1076 8jd5:4 (3.6) BS02 GLU ? GO:0001640 ... Q14833 37286794
    1077 8qez:A (1.55) BS01 GLU ? GO:0015276 ... P19491 38101041
    1078 8qez:B (1.55) BS02 GLU ? GO:0015276 ... P19491 38101041
    1079 8qez:C (1.55) BS01 GLU ? GO:0015276 ... P19491 38101041
    1080 8r32:A (1.6) BS01 GLU N/A N/A P42260 38369668
    1081 8r32:B (1.6) BS01 GLU N/A N/A P42260 38369668
    1082 8rsi:A (2.059) BS02 GLU N/A N/A A0A166ACJ5 N/A
    1083 8rsi:B (2.059) BS02 GLU N/A N/A A0A166ACJ5 N/A
    1084 8ssa:A (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1085 8ssa:B (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1086 8ssa:C (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1087 8ssa:D (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1088 8ssb:A (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1089 8ssb:B (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1090 8ssb:C (3.66) BS02 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1091 8ssb:D (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    1092 8u3g:A (3.42) BS02 GLU ? GO:0005351 ... Q9NRA2 N/A
    1093 8v3q:A (3.1) BS03 GLU N/A N/A Q8NDL9 39020174
    1094 8v3r:A (3.4) BS03 GLU N/A N/A Q8NDL9 39020174
    1095 8v3s:A (3.6) BS03 GLU N/A N/A Q8NDL9 39020174
    1096 8v4k:E (3.1) BS02 GLU N/A N/A Q8NDL9 39020174
    1097 8v4l:E (2.9) BS01 GLU N/A N/A Q8NDL9 39020174
    1098 8v4m:E (3.0) BS01 GLU N/A N/A Q8NDL9 39020174
    1099 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    1100 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    1101 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    1102 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    1103 8zne:A (2.64) BS02 GLU N/A GO:0004352 ... O74024 N/A
    1104 9are:B (3.72) BS01 GLU N/A N/A Q00960 N/A
    1105 9are:D (3.72) BS01 GLU N/A N/A Q00960 N/A
    1106 9arf:B (3.13) BS01 GLU N/A N/A Q00960 N/A
    1107 9arf:D (3.13) BS01 GLU N/A N/A Q00960 N/A
    1108 9ari:B (3.9) BS01 GLU N/A N/A Q00960 N/A
    1109 9ari:D (3.9) BS01 GLU N/A N/A Q00960 N/A
    1110 9b35:A (3.4) BS01 GLU ? N/A P42260 38778115
    1111 9b35:B (3.4) BS01 GLU ? N/A P42260 38778115
    1112 9b35:C (3.4) BS01 GLU ? N/A P42260 38778115
    1113 9b35:D (3.4) BS01 GLU ? N/A P42260 38778115
    1114 9b36:A (4.29) BS03 GLU ? N/A P42260 38778115
    1115 9b36:B (4.29) BS02 GLU ? N/A P42260 38778115
    1116 9b36:C (4.29) BS05 GLU ? N/A P42260 38778115
    1117 9b36:D (4.29) BS03 GLU ? N/A P42260 38778115
    1118 9b37:A (6.66) BS02 GLU ? N/A P42260 38778115
    1119 9b37:B (6.66) BS02 GLU ? N/A P42260 38778115
    1120 9b37:C (6.66) BS04 GLU ? N/A P42260 38778115
    1121 9b37:D (6.66) BS04 GLU ? N/A P42260 38778115
    1122 9b38:A (3.36) BS01 GLU ? N/A P42260 38778115
    1123 9b38:B (3.36) BS01 GLU ? N/A P42260 38778115
    1124 9b38:C (3.36) BS01 GLU ? N/A P42260 38778115
    1125 9b38:D (3.36) BS01 GLU ? N/A P42260 38778115
    1126 9b39:A (3.84) BS02 GLU ? N/A P42260 38778115
    1127 9b39:B (3.84) BS01 GLU ? N/A P42260 38778115
    1128 9b39:C (3.84) BS01 GLU ? N/A P42260 38778115
    1129 9b39:D (3.84) BS01 GLU ? N/A P42260 38778115
    1130 9bib:B (3.81) BS01 GLU N/A N/A G3V746 N/A
    1131 9bib:D (3.81) BS01 GLU N/A N/A G3V746 N/A
    1132 9enj:A (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    1133 9enj:B (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    1134 9enj:C (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    1135 9enj:D (2.1) BS02 GLU N/A N/A S4S6Z0 39152524

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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