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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6dm0:C (4.4) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    802 6dm0:D (4.4) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    803 6dm1:A (4.2) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    804 6dm1:B (4.2) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    805 6dm1:C (4.2) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    806 6dm1:D (4.2) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    807 6faz:A (1.4) BS01 GLU ? GO:0015276 ... P19491 29775064
    808 6faz:B (1.4) BS02 GLU ? GO:0015276 ... P19491 29775064
    809 6fjo:A (1.17) BS01 GLU ? GO:0007155 ... A4ZKM1 31517055
    810 6fqg:A (2.34139) BS01 GLU ? GO:0015276 ... P19491 N/A
    811 6fqg:B (2.34139) BS01 GLU ? GO:0015276 ... P19491 N/A
    812 6fqi:A (2.91001) BS01 GLU ? GO:0015276 ... P19491 31541113
    813 6fqi:B (2.91001) BS01 GLU ? GO:0015276 ... P19491 31541113
    814 6giv:A (1.75) BS01 GLU ? GO:0015276 ... P19491 31053408
    815 6gl4:A (1.948) BS01 GLU ? GO:0015276 ... P19491 31053408
    816 6gl4:B (1.948) BS01 GLU ? GO:0015276 ... P19491 31053408
    817 6h2t:A (1.67) BS01 GLU ? GO:0005576 ... P96257 30065086 MOAD: Kd=15.2uM
    PDBbind: -logKd/Ki=4.82, Kd=15.2uM
    818 6h45:B (2.4) BS03 GLU 2.4.2.64 GO:0005515 ... Q9BXR0 30149595
    819 6hc9:A (2.4) BS01 GLU ? GO:0015276 ... P19491 30891120
    820 6hc9:B (2.4) BS01 GLU ? GO:0015276 ... P19491 30891120
    821 6hcb:A (1.9) BS01 GLU ? GO:0015276 ... P19491 30891120
    822 6hcb:B (1.9) BS02 GLU ? GO:0015276 ... P19491 30891120
    823 6hcc:A (1.617) BS02 GLU ? GO:0015276 ... P19491 30891120
    824 6hcc:B (1.617) BS02 GLU ? GO:0015276 ... P19491 30891120
    825 6hch:A (1.6) BS01 GLU ? GO:0015276 ... P19491 30891120
    826 6hch:B (1.6) BS02 GLU ? GO:0015276 ... P19491 30891120
    827 6hch:C (1.6) BS01 GLU ? GO:0015276 ... P19491 30891120
    828 6hqv:A (3.0) BS03 GLU 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003824 ... G0S061 32632294
    829 6hqv:B (3.0) BS03 GLU 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003824 ... G0S061 32632294
    830 6jix:A (2.647) BS01 GLU ? GO:0005829 ... A0A0A7I435 31088892
    831 6jix:A (2.647) BS03 GLU ? GO:0005829 ... A0A0A7I435 31088892
    832 6jix:A (2.647) BS04 GLU ? GO:0005829 ... A0A0A7I435 31088892
    833 6jix:B (2.647) BS01 GLU ? GO:0005829 ... A0A0A7I435 31088892
    834 6jix:B (2.647) BS02 GLU ? GO:0005829 ... A0A0A7I435 31088892
    835 6jix:B (2.647) BS04 GLU ? GO:0005829 ... A0A0A7I435 31088892
    836 6jix:B (2.647) BS05 GLU ? GO:0005829 ... A0A0A7I435 31088892
    837 6jix:C (2.647) BS01 GLU ? GO:0005829 ... A0A0A7I435 31088892
    838 6jix:C (2.647) BS03 GLU ? GO:0005829 ... A0A0A7I435 31088892
    839 6jix:C (2.647) BS04 GLU ? GO:0005829 ... A0A0A7I435 31088892
    840 6jix:C (2.647) BS05 GLU ? GO:0005829 ... A0A0A7I435 31088892
    841 6jix:D (2.647) BS01 GLU ? GO:0005829 ... A0A0A7I435 31088892
    842 6jix:D (2.647) BS02 GLU ? GO:0005829 ... A0A0A7I435 31088892
    843 6jix:D (2.647) BS04 GLU ? GO:0005829 ... A0A0A7I435 31088892
    844 6jix:D (2.647) BS05 GLU ? GO:0005829 ... A0A0A7I435 31088892
    845 6o9g:A (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    846 6o9g:B (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    847 6o9g:C (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    848 6o9g:D (4.8) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    849 6r4e:A (2.353) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    850 6r4h:A (2.244) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    851 6r4i:A (2.586) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    852 6r4j:A (2.42) BS04 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    853 6r85:A (2.0) BS01 GLU ? GO:0015276 ... Q9C8E7 31871183
    854 6r85:B (2.0) BS01 GLU ? GO:0015276 ... Q9C8E7 31871183
    855 6ruf:A (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 N/A
    856 6ruf:B (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 N/A
    857 6ruf:C (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 N/A
    858 6ruf:D (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 N/A
    859 6s6y:C (3.1) BS01 GLU N/A GO:0015948 ... N/A 31776258
    860 6s6y:J (3.1) BS01 GLU N/A N/A N/A 31776258
    861 6s6y:K (3.1) BS01 GLU N/A GO:0015948 ... N/A 31776258
    862 6s6y:K (3.1) BS02 GLU N/A GO:0015948 ... N/A 31776258
    863 6s6y:O (3.1) BS01 GLU N/A GO:0015948 ... N/A 31776258
    864 6stu:A (2.39) BS01 GLU ? GO:0007155 ... M0QTV3 N/A
    865 6svm:A (2.481) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    866 6svo:A (2.328) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    867 6svp:A (2.531) BS04 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    868 6svq:A (2.717) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 32019926
    869 6u78:B (2.6) BS02 GLU 2.6.1.1 GO:0004069 ... O69689 32327655
    870 6usu:B (2.092) BS01 GLU ? GO:0015276 ... Q00959 32610085
    871 6uz6:B (1.66) BS01 GLU ? GO:0015276 ... Q00959 31969570
    872 6wyy:A (1.35) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    873 6wyy:B (1.35) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    874 6wyy:C (1.35) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    875 6wyy:D (1.35) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    876 6wz6:A (1.15) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    877 6wz6:B (1.15) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    878 6wz6:C (1.15) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    879 6wz6:D (1.15) BS01 GLU 3.5.1.38 GO:0004067 ... Q88K39 N/A
    880 6y4f:A (1.75) BS02 GLU ? N/A B4EUK6 32780778
    881 6yx7:DDD (1.419) BS01 GLU ? GO:0009579 ... A0A4Y5PW23 N/A
    882 6yx7:HHH (1.419) BS01 GLU ? GO:0009579 ... A0A4Y5PW23 N/A
    883 6zmj:A (2.774) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 33846315
    884 6zmk:A (2.382) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 33846315
    885 6zyu:A (1.9) BS01 GLU ? GO:0015276 ... P19491 34242002
    886 6zyu:B (1.9) BS02 GLU ? GO:0015276 ... P19491 34242002
    887 6zyu:C (1.9) BS05 GLU ? GO:0015276 ... P19491 34242002
    888 7bep:A (2.61) BS01 GLU N/A N/A N/A 33756110
    889 7bep:B (2.61) BS01 GLU N/A N/A N/A 33756110
    890 7bep:D (2.61) BS01 GLU N/A N/A N/A 33756110
    891 7d53:A (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    892 7d53:B (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    893 7d53:C (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    894 7d53:D (1.6) BS02 GLU ? GO:0006541 ... Q9I6J4 34605433
    895 7eu7:B (3.5) BS01 GLU ? GO:0005216 ... Q12879 34321660
    896 7eu7:D (3.5) BS01 GLU ? GO:0005216 ... Q12879 34321660
    897 7f3o:A (1.44) BS01 GLU ? GO:0015276 ... P42262 34267258
    898 7f3o:B (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    899 7f3o:C (1.44) BS01 GLU ? GO:0015276 ... P42262 34267258
    900 7f3o:D (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    901 7f3o:E (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    902 7f3o:F (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    903 7f5i:A (1.65) BS01 GLU 3.5.1.28 GO:0008270 ... Q8XLA4 34482025
    904 7f5i:A (1.65) BS02 GLU 3.5.1.28 GO:0008270 ... Q8XLA4 34482025
    905 7f71:A (1.58) BS01 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    906 7f71:A (1.58) BS03 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    907 7f71:B (1.58) BS01 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    908 7f8p:A (1.7) BS02 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    909 7fhr:A (1.84) BS01 GLU 1.14.12.7 GO:0005506 ... Q1LBR9 34800435
    910 7lz0:A (2.29) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    911 7lz0:B (2.29) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    912 7lz0:C (2.29) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    913 7lzh:A (3.57) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    914 7lzh:B (3.57) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    915 7lzh:C (3.57) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    916 7lzh:D (3.57) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    917 7lzi:A (4.39) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    918 7lzi:B (4.39) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    919 7lzi:C (4.39) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    920 7lzi:D (4.39) BS01 GLU ? GO:0015276 ... Q8GXJ4 34161757
    921 7ml8:A (2.7) BS01 GLU 3.1.-.- GO:0003723 ... C3W5S0 N/A
    922 7mtr:A (3.3) BS01 GLU ? GO:0004930 ... Q14416 34194039
    923 7mtr:B (3.3) BS01 GLU ? GO:0004930 ... Q14416 34194039
    924 7mts:A (3.2) BS02 GLU ? GO:0004930 ... Q14416 34194039
    925 7mts:B (3.2) BS01 GLU ? GO:0004930 ... Q14416 34194039
    926 7ndl:A (2.223) BS02 GLU 2.6.1.16 GO:0004360 ... Q06210 33846315
    927 7ocf:A (3.6) BS02 GLU ? GO:0001540 ... P19490 34079129
    928 7ocf:B (3.6) BS02 GLU ? GO:0005216 ... P19491 34079129
    929 7ocf:C (3.6) BS02 GLU ? GO:0001540 ... P19490 34079129
    930 7ocf:D (3.6) BS02 GLU ? GO:0005216 ... P19491 34079129
    931 7p9u:B (3.7) BS01 GLU ? GO:0003333 ... Q9UPY5 34880232
    932 7qhb:A (3.5) BS01 GLU ? GO:0001540 ... P19490 35136046
    933 7qhb:B (3.5) BS02 GLU ? GO:0005216 ... P19491 35136046
    934 7qhb:C (3.5) BS02 GLU ? GO:0001540 ... P19490 35136046
    935 7qhb:D (3.5) BS02 GLU ? GO:0005216 ... P19491 35136046
    936 7qhh:A (3.6) BS01 GLU ? GO:0001540 ... P19490 35136046
    937 7qhh:B (3.6) BS01 GLU ? GO:0005216 ... P19491 35136046
    938 7qhh:C (3.6) BS01 GLU ? GO:0001540 ... P19490 35136046
    939 7qhh:D (3.6) BS01 GLU ? GO:0005216 ... P19491 35136046
    940 7r5q:A (1.9) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 35682622
    941 7r5q:B (1.9) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 35682622
    942 7r5q:C (1.9) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 35682622
    943 7r5q:D (1.9) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 35682622
    944 7ryy:A (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    945 7ryy:B (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    946 7ryy:C (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    947 7ryy:D (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    948 7rz6:A (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    949 7rz6:B (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    950 7rz6:C (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    951 7rz6:D (4.4) BS01 GLU ? GO:0000149 ... P19491 34678168
    952 7saa:B (2.97) BS01 GLU ? GO:0005216 ... Q00960 35637422
    953 7saa:D (2.97) BS01 GLU ? GO:0005216 ... Q00960 35637422
    954 7sac:B (3.69) BS01 GLU ? GO:0005216 ... Q00960 35637422
    955 7sac:D (3.69) BS01 GLU ? GO:0005216 ... Q00960 35637422
    956 7st9:C (2.2) BS03 GLU ? GO:0000077 ... P38629 35314831
    957 7tnk:A (4.5) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    958 7tnl:A (3.59) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    959 7tnl:C (3.59) BS02 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    960 7tnm:A (4.74) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    961 7tnm:C (4.74) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    962 7tnn:A (3.91) BS01 GLU ? GO:0000149 ... P19491
    Q71RJ2    		 35444281
    963 7tnn:B (3.91) BS01 GLU ? GO:0000149 ... P19491
    Q71RJ2    		 35444281
    964 7tno:A (4.02) BS01 GLU ? GO:0000149 ... P19491
    Q71RJ2    		 35444281
    965 7tno:B (4.02) BS01 GLU ? GO:0000149 ... P19491
    Q71RJ2    		 35444281
    966 7tno:C (4.02) BS02 GLU ? GO:0000149 ... P19491
    Q71RJ2    		 35444281
    967 7tnp:A (3.96) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    968 7tnp:B (3.96) BS01 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    969 7tnp:C (3.96) BS02 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    970 7tnp:D (3.96) BS02 GLU ? GO:0000149 ... P19491
    Q8VHX0    		 35444281
    971 7xr4:A (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    972 7xr4:B (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    973 7xr4:C (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    974 7yfg:B (3.6) BS01 GLU ? GO:0005216 ... Q00961 36959261
    975 7yfg:D (3.6) BS01 GLU ? GO:0005216 ... Q00961 36959261
    976 7yfh:B (3.0) BS01 GLU ? GO:0005216 ... Q00961 36959261
    977 7yfh:D (3.0) BS01 GLU ? GO:0005216 ... Q00961 36959261
    978 7yfi:B (3.3) BS01 GLU ? GO:0005216 ... G3V9C5 36959261
    979 7yfi:D (3.3) BS01 GLU ? GO:0005216 ... Q00961 36959261
    980 7yfl:B (3.9) BS01 GLU ? GO:0005216 ... O15399 36959261
    981 7yfl:D (3.9) BS01 GLU ? GO:0005216 ... O15399 36959261
    982 7yfr:B (5.1) BS01 GLU ? GO:0005216 ... O15399 36959261
    983 7yfr:D (5.1) BS01 GLU ? GO:0005216 ... O15399 36959261
    984 8ayo:A (3.3) BS01 GLU ? GO:0001540 ... P19490 36966141
    985 8ayo:B (3.3) BS01 GLU ? GO:0005216 ... P19491 36966141
    986 8ayo:C (3.3) BS01 GLU ? GO:0001540 ... P19490 36966141
    987 8ayo:D (3.3) BS01 GLU ? GO:0005216 ... P19491 36966141
    988 8c1p:A (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    989 8c1p:B (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    990 8c1p:C (2.9) BS03 GLU ? GO:0001540 ... P19490 37704721
    991 8c1p:D (2.9) BS02 GLU ? GO:0001540 ... P19490 37704721
    992 8ctc:A (2.8) BS01 GLU ? GO:0001662 ... P43005 37142617
    993 8ctc:B (2.8) BS01 GLU ? GO:0001662 ... P43005 37142617
    994 8ctc:C (2.8) BS01 GLU ? GO:0001662 ... P43005 37142617
    995 8ctd:A (3.42) BS01 GLU ? GO:0001662 ... P43005 37142617
    996 8e96:B (3.38) BS01 GLU ? GO:0005216 ... O15399 36309015
    997 8e96:D (3.38) BS01 GLU ? GO:0005216 ... O15399 36309015
    998 8ece:A (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    999 8ece:B (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    1000 8ece:C (1.86) BS01 GLU 3.5.1.1 GO:0004067 ... P00805 36310372
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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