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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 4wxj:A (2.002) BS01 GLU ? GO:0015276 ... Q9VMP3 25918369
    602 4wxj:B (2.002) BS01 GLU ? GO:0015276 ... Q9VMP3 25918369
    603 4x48:A (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    604 4x48:B (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    605 4x48:C (1.89) BS01 GLU ? GO:0015276 ... P19491 25905800
    606 4xl8:B (1.65) BS01 GLU ? GO:0007155 ... A0MK70 25674795
    607 4xn1:A (2.2) BS02 GLU 3.4.11.2 GO:0004177 ... P04825 N/A
    608 4xo5:A (1.98) BS02 GLU 3.4.11.2 GO:0004177 ... P04825 N/A
    609 4xo5:A (1.98) BS03 GLU 3.4.11.2 GO:0004177 ... P04825 N/A
    610 4y06:A (2.18) BS02 GLU 3.4.14.- GO:0008239 ... V5YM14 26057589
    611 4y06:B (2.18) BS02 GLU 3.4.14.- GO:0008239 ... V5YM14 26057589
    612 4yu0:A (1.26) BS01 GLU ? GO:0015276 ... P19491 N/A
    613 4yu0:B (1.26) BS01 GLU ? GO:0015276 ... P19491 N/A
    614 4z0i:A (1.45) BS01 GLU ? GO:0015276 ... P19491 N/A
    615 4z0i:B (1.45) BS01 GLU ? GO:0015276 ... P19491 N/A
    616 4zcg:B (2.22) BS01 GLU 2.3.2.2
    3.4.19.13
    3.4.19.14    		 GO:0006751 ... P19440 26013825
    617 5aa3:A (3.2) BS01 GLU 4.2.2.n1 GO:0000270 ... Q9HXN1 27618662
    618 5am9:B (1.8) BS01 GLU 3.4.15.1 GO:0006508 ... P12821 26748546
    619 5am9:C (1.8) BS01 GLU 3.4.15.1 GO:0006508 ... P12821 26748546
    620 5buu:A (2.07) BS02 GLU ? GO:0015276 ... P19491 26771108
    621 5buu:B (2.07) BS03 GLU ? GO:0015276 ... P19491 26771108
    622 5cmk:A (1.801) BS01 GLU ? GO:0015276 ... P42260 27580033
    623 5cni:A (2.69) BS01 GLU ? GO:0004930 ... Q14416 26313429
    624 5cni:B (2.69) BS01 GLU ? GO:0004930 ... Q14416 26313429
    625 5cnk:A (3.15) BS01 GLU ? GO:0004930 ... Q14832 26313429
    626 5cr9:A (1.7) BS01 GLU ? GO:0046872 ... C7MWN7 N/A
    627 5dt6:A (1.598) BS01 GLU ? GO:0015276 ... Q03445 27889096
    628 5dtb:A (1.843) BS01 GLU ? GO:0015276 ... Q9VDH5 27889096
    629 5dtb:B (1.843) BS01 GLU ? GO:0015276 ... Q9VDH5 27889096
    630 5ejq:A (2.19) BS02 GLU ? GO:0005856 ... Q9U1M8 27166421
    631 5elm:B (2.0) BS01 GLU 5.1.1.-
    5.1.1.10
    5.1.1.13    		 GO:0016853 ... C3SWD2 26555188
    632 5elm:C (2.0) BS01 GLU 5.1.1.-
    5.1.1.10
    5.1.1.13    		 GO:0016853 ... C3SWD2 26555188
    633 5elm:D (2.0) BS01 GLU 5.1.1.-
    5.1.1.10
    5.1.1.13    		 GO:0016853 ... C3SWD2 26555188
    634 5elv:A (1.92) BS02 GLU ? GO:0015276 ... P19491 27276258
    635 5elv:B (1.92) BS03 GLU ? GO:0015276 ... P19491 27276258
    636 5eyf:A (1.52) BS01 GLU ? GO:0015276 ... Q3XZW5 N/A
    637 5eyf:B (1.52) BS01 GLU ? GO:0015276 ... Q3XZW5 N/A
    638 5fth:A (2.9) BS01 GLU ? GO:0015276 ... P19491 26924438
    639 5fth:B (2.9) BS01 GLU ? GO:0015276 ... P19491 26924438
    640 5fth:C (2.9) BS01 GLU ? GO:0015276 ... P19491 26924438
    641 5fti:A (1.35) BS01 GLU ? GO:0015276 ... P19491 26924438
    642 5fti:B (1.35) BS01 GLU ? GO:0015276 ... P19491 26924438
    643 5h8f:A (1.81) BS01 GLU ? GO:0015276 ... Q12879 26875626
    644 5h8h:A (2.23) BS01 GLU ? GO:0015276 ... Q12879 26875626
    645 5h8n:A (2.5) BS01 GLU ? GO:0015276 ... Q12879 26875626
    646 5h8q:A (1.9) BS01 GLU ? GO:0015276 ... Q12879 26875626
    647 5h8s:A (1.703) BS01 GLU ? GO:0015276 ... P42262 26875626
    648 5h8s:B (1.703) BS02 GLU ? GO:0015276 ... P42262 26875626
    649 5h8s:C (1.703) BS01 GLU ? GO:0015276 ... P42262 26875626
    650 5hw0:A (1.702) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 26855287
    651 5hw0:B (1.702) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 26855287
    652 5hw0:C (1.702) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 26855287
    653 5hw0:D (1.702) BS01 GLU 3.5.1.1 GO:0004067 ... P06608 26855287
    654 5hxx:A (2.0) BS03 GLU 2.6.1.1 GO:0004069 ... Q8NTR2 N/A
    655 5hxx:B (2.0) BS02 GLU 2.6.1.1 GO:0004069 ... Q8NTR2 N/A
    656 5i2k:A (2.86) BS01 GLU ? GO:0015276 ... Q12879 26919761
    657 5i2n:A (2.12) BS01 GLU ? GO:0015276 ... Q12879 26919761
    658 5i56:B (2.28) BS01 GLU ? GO:0015276 ... Q00959 27618671
    659 5i57:B (1.7) BS01 GLU ? GO:0015276 ... Q00959 27618671
    660 5i58:B (2.52) BS01 GLU ? GO:0015276 ... Q00959 27618671
    661 5i59:B (2.25) BS01 GLU ? GO:0015276 ... Q00959 27618671
    662 5ict:A (1.68) BS01 GLU ? GO:0015276 ... Q03445 27889096
    663 5iou:B (7.0) BS01 GLU ? GO:0005216 ... A7XY94 27062927
    664 5iou:D (7.0) BS01 GLU ? GO:0005216 ... A7XY94 27062927
    665 5iov:B (7.5) BS02 GLU ? GO:0005216 ... A7XY94 27062927
    666 5iov:D (7.5) BS02 GLU ? GO:0005216 ... A7XY94 27062927
    667 5jty:B (2.72) BS02 GLU ? GO:0015276 ... Q00959 27618671
    668 5jwi:A (2.1) BS02 GLU 3.4.14.- GO:0004177 ... F8WQK8 28588213
    669 5jwi:B (2.1) BS02 GLU 3.4.14.- GO:0004177 ... F8WQK8 28588213
    670 5k45:A (1.63) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    671 5k45:B (1.63) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    672 5k45:C (1.63) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    673 5k45:D (1.63) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    674 5k4h:A (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    675 5k4h:B (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    676 5k4h:C (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    677 5k4h:D (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    678 5k4h:E (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    679 5k4h:F (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    680 5k4h:G (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    681 5k4h:H (2.0) BS01 GLU 3.5.1.1 GO:0004067 ... P50286 28139703
    682 5k66:A (2.002) BS02 GLU ? GO:0008418 ... N1P8Q8 27791147
    683 5kcj:A (2.09) BS01 GLU ? GO:0015276 ... Q12879 26875626
    684 5kdt:A (2.44) BS01 GLU ? GO:0015276 ... Q12879 26919761
    685 5n7l:A (2.501) BS01 GLU ? N/A P25060 30425318
    686 5n7l:A (2.501) BS02 GLU ? N/A P25060 30425318
    687 5ns9:A (1.44) BS01 GLU ? GO:0015276 ... P19491 28863863
    688 5ns9:B (1.44) BS01 GLU ? GO:0015276 ... P19491 28863863
    689 5o9a:A (1.78) BS02 GLU ? GO:0015276 ... P19491 29256599
    690 5o9a:B (1.78) BS03 GLU ? GO:0015276 ... P19491 29256599
    691 5o9a:C (1.78) BS02 GLU ? GO:0015276 ... P19491 29256599
    692 5o9a:D (1.78) BS03 GLU ? GO:0015276 ... P19491 29256599
    693 5oew:A (2.0) BS01 GLU ? GO:0015276 ... P19491 29256599
    694 5oew:B (2.0) BS02 GLU ? GO:0015276 ... P19491 29256599
    695 5oew:C (2.0) BS02 GLU ? GO:0015276 ... P19491 29256599
    696 5osn:A (2.3) BS01 GLU ? N/A Q65480 28628129
    697 5oxm:A (2.295) BS20 GLU ? GO:0005886 ... Q5M4H8 29429879 PDBbind: -logKd/Ki=1.30, Kd>50mM
    698 5tp9:A (2.4) BS01 GLU ? GO:0015276 ... Q12879 28105280
    699 5tpa:A (2.48) BS01 GLU ? GO:0015276 ... Q12879 28105280
    700 5un1:B (3.6) BS01 GLU ? GO:0005216 ... A7XY94 29670280
    701 5un1:D (3.6) BS02 GLU ? GO:0005216 ... A7XY94 29670280
    702 5un1:G (3.6) BS02 GLU ? GO:0005216 ... A0A1L8F5J9 29670280
    703 5un1:H (3.6) BS01 GLU ? GO:0005216 ... A7XY94 29670280
    704 5uow:B (4.5) BS01 GLU ? GO:0005216 ... B7ZSK1 28232581
    705 5vaw:A (1.69) BS01 GLU ? GO:0005515 ... A0A0D5YCX7
    P0AEX9    		 30413536
    706 5weo:A (4.2) BS01 GLU ? GO:0000149 ... O88602
    P19491    		 28737760
    707 5weo:B (4.2) BS01 GLU ? GO:0000149 ... O88602
    P19491    		 28737760
    708 5weo:C (4.2) BS02 GLU ? GO:0000149 ... O88602
    P19491    		 28737760
    709 5weo:D (4.2) BS02 GLU ? GO:0000149 ... O88602
    P19491    		 28737760
    710 5wml:A (2.103) BS02 GLU 2.6.1.1
    2.6.1.78
    2.6.1.79    		 GO:0004069 ... Q9SIE1 29405514
    711 5wml:B (2.103) BS02 GLU 2.6.1.1
    2.6.1.78
    2.6.1.79    		 GO:0004069 ... Q9SIE1 29405514
    712 5wo1:A (1.87) BS01 GLU ? GO:0042597 ... P77754 27239796
    713 5x2p:A (2.608) BS01 GLU ? GO:0004930 ... A0A173M0G2 28534491
    714 5x2p:B (2.608) BS01 GLU ? GO:0004930 ... A0A173M094 28534491
    715 5x2p:C (2.608) BS01 GLU ? GO:0004930 ... A0A173M0G2 28534491
    716 5x2p:D (2.608) BS01 GLU ? GO:0004930 ... A0A173M094 28534491
    717 5xnj:A (2.82) BS01 GLU ? GO:0016853 ... Q9RNB4 N/A
    718 5ybf:A (1.5) BS01 GLU ? GO:0015276 ... P42262 29298820
    719 5ybf:B (1.5) BS02 GLU ? GO:0015276 ... P42262 29298820
    720 5ybf:C (1.5) BS01 GLU ? GO:0015276 ... P42262 29298820
    721 5ybf:D (1.5) BS02 GLU ? GO:0015276 ... P42262 29298820
    722 5ybf:E (1.5) BS02 GLU ? GO:0015276 ... P42262 29298820
    723 5ybf:F (1.5) BS02 GLU ? GO:0015276 ... P42262 29298820
    724 5ybg:A (1.52) BS01 GLU ? GO:0015276 ... P42262 29298820
    725 5ybg:B (1.52) BS02 GLU ? GO:0015276 ... P42262 29298820
    726 5ybg:C (1.52) BS01 GLU ? GO:0015276 ... P42262 29298820
    727 5ybg:D (1.52) BS02 GLU ? GO:0015276 ... P42262 29298820
    728 5ybg:E (1.52) BS02 GLU ? GO:0015276 ... P42262 29298820
    729 5ybg:F (1.52) BS02 GLU ? GO:0015276 ... P42262 29298820
    730 5yge:A (2.039) BS02 GLU 2.3.1.1 GO:0004042 ... O33289 28943401
    731 5yge:B (2.039) BS02 GLU 2.3.1.1 GO:0004042 ... O33289 28943401
    732 5yhv:A (2.7) BS01 GLU 2.6.1.66 GO:0003824 ... P96847 N/A
    733 5zg0:A (1.58) BS01 GLU ? GO:0015276 ... P42262 30209408
    734 5zg0:B (1.58) BS02 GLU ? GO:0015276 ... P42262 30209408
    735 5zg0:C (1.58) BS02 GLU ? GO:0015276 ... P42262 30209408
    736 5zg0:D (1.58) BS02 GLU ? GO:0015276 ... P42262 30209408
    737 5zg0:E (1.58) BS02 GLU ? GO:0015276 ... P42262 30209408
    738 5zg0:F (1.58) BS02 GLU ? GO:0015276 ... P42262 30209408
    739 5zg1:A (1.32) BS01 GLU ? GO:0015276 ... P42262 30209408
    740 5zg1:B (1.32) BS02 GLU ? GO:0015276 ... P42262 30209408
    741 5zg3:A (1.65) BS02 GLU ? GO:0015276 ... P42262 30209408
    742 5zg3:B (1.65) BS02 GLU ? GO:0015276 ... P42262 30209408
    743 5zg3:C (1.65) BS01 GLU ? GO:0015276 ... P42262 30209408
    744 5zg3:D (1.65) BS02 GLU ? GO:0015276 ... P42262 30209408
    745 5zg3:E (1.65) BS03 GLU ? GO:0015276 ... P42262 30209408
    746 5zg3:F (1.65) BS02 GLU ? GO:0015276 ... P42262 30209408
    747 5zi7:A (1.86) BS01 GLU 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    748 5zi7:B (1.86) BS01 GLU 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    749 6b60:A (2.7) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    750 6b60:A (2.7) BS04 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    751 6b60:B (2.7) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    752 6b60:B (2.7) BS02 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    753 6b62:A (2.003) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    754 6b62:A (2.003) BS02 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    755 6b62:A (2.003) BS05 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    756 6b62:A (2.003) BS06 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    757 6b62:B (2.003) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    758 6b62:B (2.003) BS02 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    759 6b62:B (2.003) BS03 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    760 6b62:B (2.003) BS04 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    761 6b66:A (2.5) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    762 6b66:A (2.5) BS02 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    763 6b66:B (2.5) BS01 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    764 6b66:B (2.5) BS02 GLU 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    765 6brl:A (2.0) BS01 GLU 6.1.1.17 GO:0000049 ... A0A1T3HI54 35924598
    766 6bsz:A (2.65) BS01 GLU ? GO:0004930 ... O00222 29402739
    767 6bsz:B (2.65) BS01 GLU ? GO:0004930 ... O00222 29402739
    768 6cce:D (3.05) BS03 GLU 2.7.7.6 GO:0000287 ... A0QS66 30297823
    769 6ccv:D (3.05) BS03 GLU 2.7.7.6 GO:0000287 ... A0QS66 30297823
    770 6dcf:D (3.45) BS04 GLU 2.7.7.6 GO:0000287 ... A0QS66 30297823
    771 6dhd:A (2.5) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    772 6dhd:B (2.5) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    773 6dhd:C (2.5) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    774 6dhd:D (2.5) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    775 6dhd:E (2.5) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    776 6dhd:F (2.5) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    777 6dhm:A (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    778 6dhm:B (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    779 6dhm:C (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    780 6dhm:D (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    781 6dhm:E (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    782 6dhm:F (3.0) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    783 6dhn:A (3.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    784 6dhn:B (3.3) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    785 6dhn:C (3.3) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    786 6dhn:D (3.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    787 6dhn:E (3.3) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    788 6dhn:F (3.3) BS02 GLU 1.4.1.3 GO:0004352 ... P00366 21749647
    789 6dhq:A (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    790 6dhq:B (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    791 6dhq:C (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    792 6dhq:D (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    793 6dhq:E (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    794 6dhq:F (2.3) BS01 GLU 1.4.1.3 GO:0004352 ... P00366 11254391
    795 6dlz:A (3.9) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    796 6dlz:B (3.9) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    797 6dlz:C (3.9) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    798 6dlz:D (3.9) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    799 6dm0:A (4.4) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    800 6dm0:B (4.4) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698    		 30122377
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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