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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 8rgc:A (1.55) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    6002 8rgc:A (1.55) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    6003 8rgc:A (1.55) BS04 GLC N/A GO:0016491 ... H0SLX7 39002715
    6004 8rgd:A (1.71) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    6005 8rgd:A (1.71) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    6006 8rgd:A (1.71) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    6007 8ru4:A (2.13) BS02 GLC N/A N/A P35222 39167026
    6008 8ru4:A (2.13) BS03 GLC N/A N/A P35222 39167026
    6009 8ru4:B (2.13) BS01 GLC N/A N/A P35222 39167026
    6010 8ru4:B (2.13) BS02 GLC N/A N/A P35222 39167026
    6011 8ru4:B (2.13) BS03 GLC N/A N/A P35222 39167026
    6012 8ru4:B (2.13) BS04 GLC N/A N/A P35222 39167026
    6013 8sbu:A (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    6014 8sbu:A (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    6015 8sbu:B (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    6016 8sbu:B (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    6017 8sdb:A (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6018 8sdb:A (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6019 8sdb:A (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6020 8sdb:A (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6021 8sdb:A (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6022 8sdb:A (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6023 8sdb:A (3.0) BS07 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6024 8sdb:A (3.0) BS08 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6025 8sdb:A (3.0) BS09 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6026 8sdb:B (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6027 8sdb:B (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6028 8sdb:B (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6029 8sdb:B (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6030 8sdb:B (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6031 8sdb:B (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6032 8sdb:C (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6033 8sdb:C (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6034 8sdb:C (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6035 8sdb:C (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    6036 8svy:A (1.47) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37465311
    6037 8svy:A (1.47) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37465311
    6038 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    6039 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    6040 8tcr:A (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6041 8tcr:A (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6042 8tcr:B (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6043 8tcr:B (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6044 8tcr:B (2.08) BS04 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6045 8tcr:C (2.08) BS01 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6046 8tcr:D (2.08) BS02 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6047 8tcr:D (2.08) BS03 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6048 8tcr:D (2.08) BS04 GLC N/A GO:0016853 ... A0A9P3ZKE6 38898276
    6049 8tcs:A (1.5) BS01 GLC N/A N/A N/A 38898276
    6050 8tcs:B (1.5) BS01 GLC N/A N/A N/A 38898276
    6051 8tcs:C (1.5) BS01 GLC N/A N/A N/A 38898276
    6052 8tcs:D (1.5) BS01 GLC N/A N/A N/A 38898276
    6053 8tde:A (1.85) BS01 GLC ? GO:0016787 ... Q8A5T1 38898276
    6054 8tdh:A (2.95) BS01 GLC N/A N/A N/A 38898276
    6055 8tdh:A (2.95) BS02 GLC N/A N/A N/A 38898276
    6056 8tdh:A (2.95) BS03 GLC N/A N/A N/A 38898276
    6057 8tdh:A (2.95) BS04 GLC N/A N/A N/A 38898276
    6058 8tdh:A (2.95) BS05 GLC N/A N/A N/A 38898276
    6059 8tdh:B (2.95) BS01 GLC N/A N/A N/A 38898276
    6060 8tdh:B (2.95) BS02 GLC N/A N/A N/A 38898276
    6061 8tdh:B (2.95) BS03 GLC N/A N/A N/A 38898276
    6062 8tdh:B (2.95) BS04 GLC N/A N/A N/A 38898276
    6063 8tdh:B (2.95) BS05 GLC N/A N/A N/A 38898276
    6064 8tdh:B (2.95) BS06 GLC N/A N/A N/A 38898276
    6065 8tdh:B (2.95) BS07 GLC N/A N/A N/A 38898276
    6066 8tdh:B (2.95) BS08 GLC N/A N/A N/A 38898276
    6067 8tdh:B (2.95) BS09 GLC N/A N/A N/A 38898276
    6068 8tdh:C (2.95) BS01 GLC N/A N/A N/A 38898276
    6069 8tdh:C (2.95) BS02 GLC N/A N/A N/A 38898276
    6070 8tdh:C (2.95) BS03 GLC N/A N/A N/A 38898276
    6071 8tdh:C (2.95) BS04 GLC N/A N/A N/A 38898276
    6072 8tdh:C (2.95) BS05 GLC N/A N/A N/A 38898276
    6073 8tdh:C (2.95) BS06 GLC N/A N/A N/A 38898276
    6074 8tdh:C (2.95) BS07 GLC N/A N/A N/A 38898276
    6075 8tdh:C (2.95) BS08 GLC N/A N/A N/A 38898276
    6076 8tdh:D (2.95) BS01 GLC N/A N/A N/A 38898276
    6077 8tdh:D (2.95) BS02 GLC N/A N/A N/A 38898276
    6078 8tdh:D (2.95) BS03 GLC N/A N/A N/A 38898276
    6079 8tdh:D (2.95) BS04 GLC N/A N/A N/A 38898276
    6080 8tdh:D (2.95) BS05 GLC N/A N/A N/A 38898276
    6081 8tdh:D (2.95) BS06 GLC N/A N/A N/A 38898276
    6082 8tlv:A (2.659) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6083 8tlv:A (2.659) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6084 8tlw:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6085 8tlw:A (2.106) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6086 8tlx:A (2.097) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6087 8tlx:A (2.097) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    6088 8tzo:C (3.1) BS04 GLC ? GO:0005509 ... P27797 37852257
    6089 8uqv:A (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    6090 8uqv:B (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    6091 8uqv:C (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    6092 8uqv:D (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    6093 8wg0:A (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6094 8wg0:B (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6095 8wg0:C (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6096 8wg0:C (1.95) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6097 8wg0:D (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6098 8wg1:A (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6099 8wg1:A (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6100 8wg1:B (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6101 8wg1:B (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6102 8wg1:C (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6103 8wg1:C (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6104 8wg1:D (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6105 8wg1:D (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6106 8wg2:A (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6107 8wg2:A (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6108 8wg2:A (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6109 8wg2:B (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6110 8wg2:B (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6111 8wg2:C (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6112 8wg2:C (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6113 8wg2:D (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6114 8wg2:D (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6115 8wg2:D (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    6116 8wr2:A (1.94) BS01 GLC 2.7.1.35 GO:0000287 ... O00764 38150934
    6117 8wr2:B (1.94) BS01 GLC 2.7.1.35 GO:0000287 ... O00764 38150934
    6118 8x8k:A (2.1) BS01 GLC N/A N/A O95210 39236246
    6119 8x8k:A (2.1) BS02 GLC N/A N/A O95210 39236246
    6120 8x8k:A (2.1) BS03 GLC N/A N/A O95210 39236246
    6121 8x8k:A (2.1) BS04 GLC N/A N/A O95210 39236246
    6122 8x8k:B (2.1) BS01 GLC N/A N/A O95210 39236246
    6123 8x8k:B (2.1) BS02 GLC N/A N/A O95210 39236246
    6124 8x8k:C (2.1) BS01 GLC N/A N/A O95210 39236246
    6125 8x8k:C (2.1) BS02 GLC N/A N/A O95210 39236246
    6126 8x8k:C (2.1) BS03 GLC N/A N/A O95210 39236246
    6127 8x8k:C (2.1) BS04 GLC N/A N/A O95210 39236246
    6128 8x8k:D (2.1) BS01 GLC N/A N/A O95210 39236246
    6129 8x8k:D (2.1) BS02 GLC N/A N/A O95210 39236246
    6130 8x8k:D (2.1) BS03 GLC N/A N/A O95210 39236246
    6131 8xpk:A (2.0) BS01 GLC N/A N/A N/A N/A
    6132 8xpk:B (2.0) BS01 GLC N/A N/A N/A N/A
    6133 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    6134 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6135 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6136 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6137 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6138 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6139 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    6140 8y6c:A (1.47) BS02 GLC N/A N/A Q5F4T5 N/A
    6141 8y6c:B (1.47) BS01 GLC N/A N/A Q5F4T5 N/A
    6142 8y6d:B (1.41) BS01 GLC N/A N/A Q5F4T5 N/A
    6143 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    6144 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    6145 8zrz:A (1.26) BS01 GLC N/A N/A P36924 N/A
    6146 8zrz:A (1.26) BS02 GLC N/A N/A P36924 N/A
    6147 8zrz:A (1.26) BS03 GLC N/A N/A P36924 N/A
    6148 8zrz:A (1.26) BS04 GLC N/A N/A P36924 N/A
    6149 8zrz:A (1.26) BS06 GLC N/A N/A P36924 N/A
    6150 8zrz:A (1.26) BS07 GLC N/A N/A P36924 N/A
    6151 8zrz:A (1.26) BS08 GLC N/A N/A P36924 N/A
    6152 8zrz:A (1.26) BS09 GLC N/A N/A P36924 N/A
    6153 8zrz:A (1.26) BS10 GLC N/A N/A P36924 N/A
    6154 9b8o:a (3.2) BS02 GLC N/A GO:0000220 ... P25286 38900912
    6155 9bcg:A (1.898) BS01 GLC N/A N/A P0AEX9
    Q07820    		 39102508
    6156 9bcg:A (1.898) BS02 GLC N/A N/A P0AEX9
    Q07820    		 39102508
    6157 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    6158 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    6159 9cgt:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    6160 9j4i:B (1.96) BS04 GLC N/A N/A F8QV43 39098696
    6161 9j4i:B (1.96) BS08 GLC N/A N/A F8QV43 39098696
    6162 9j4i:C (1.96) BS04 GLC N/A N/A F8QV43 39098696
    6163 9j4j:B (2.803) BS01 GLC N/A N/A F8QV43 39098696
    6164 9j4k:A (2.201) BS02 GLC N/A N/A F8QV43 39098696
    6165 9j4k:B (2.201) BS02 GLC N/A N/A F8QV43 39098696
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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