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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 2z1k:A (2.3) BS04 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1602 2z1k:A (2.3) BS05 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1603 2z1k:A (2.3) BS06 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1604 2z1k:B (2.3) BS01 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1605 2z1k:B (2.3) BS02 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1606 2z1k:B (2.3) BS03 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1607 2z1k:B (2.3) BS04 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1608 2z1k:B (2.3) BS05 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1609 2z1k:C (2.3) BS01 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1610 2z1k:C (2.3) BS02 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1611 2z1k:C (2.3) BS03 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1612 2z1k:C (2.3) BS04 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1613 2z1k:D (2.3) BS01 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1614 2z1k:D (2.3) BS02 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1615 2z1k:D (2.3) BS03 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1616 2z1k:D (2.3) BS04 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1617 2z1k:D (2.3) BS05 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1618 2z1k:D (2.3) BS06 GLC 3.2.1.41 GO:0005975 ... Q5SI17 N/A
    1619 2z4t:A (2.5) BS01 GLC ? GO:0016757 ... A8QYL1 17962295
    1620 2z8g:A (1.7) BS02 GLC 3.2.1.57 GO:0004553 ... O00105 18155243
    1621 2z8g:A (1.7) BS03 GLC 3.2.1.57 GO:0004553 ... O00105 18155243
    1622 2z8g:B (1.7) BS02 GLC 3.2.1.57 GO:0004553 ... O00105 18155243
    1623 2z8g:B (1.7) BS03 GLC 3.2.1.57 GO:0004553 ... O00105 18155243
    1624 2zb2:A (2.45) BS01 GLC 2.4.1.1 GO:0000166 ... P06737 18434170
    1625 2zb2:B (2.45) BS02 GLC 2.4.1.1 GO:0000166 ... P06737 18434170
    1626 2zid:A (2.2) BS01 GLC 3.2.1.70 GO:0004556 ... Q99040 18395742
    1627 2zid:A (2.2) BS02 GLC 3.2.1.70 GO:0004556 ... Q99040 18395742
    1628 2zox:A (1.9) BS01 GLC 3.2.1.21
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... Q9H227 18662675
    1629 2zq0:A (1.6) BS01 GLC 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    1630 2zq0:B (1.6) BS01 GLC 3.2.1.3 GO:0000272 ... G8JZS4 18981178
    1631 2zxt:A (3.0) BS01 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    1632 2zxt:A (3.0) BS02 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    1633 2zyk:A (2.5) BS01 GLC ? GO:0005886 ... Q9AJF5 17371546
    1634 2zyk:A (2.5) BS02 GLC ? GO:0005886 ... Q9AJF5 17371546
    1635 2zyk:A (2.5) BS03 GLC ? GO:0005886 ... Q9AJF5 17371546
    1636 2zyk:A (2.5) BS04 GLC ? GO:0005886 ... Q9AJF5 17371546
    1637 2zyk:B (2.5) BS01 GLC ? GO:0005886 ... Q9AJF5 17371546
    1638 2zyk:B (2.5) BS02 GLC ? GO:0005886 ... Q9AJF5 17371546
    1639 2zyk:B (2.5) BS03 GLC ? GO:0005886 ... Q9AJF5 17371546
    1640 2zyk:B (2.5) BS04 GLC ? GO:0005886 ... Q9AJF5 17371546
    1641 2zyk:C (2.5) BS01 GLC ? GO:0005886 ... Q9AJF5 17371546
    1642 2zyk:C (2.5) BS02 GLC ? GO:0005886 ... Q9AJF5 17371546
    1643 2zyk:C (2.5) BS03 GLC ? GO:0005886 ... Q9AJF5 17371546
    1644 2zyk:C (2.5) BS04 GLC ? GO:0005886 ... Q9AJF5 17371546
    1645 2zyk:C (2.5) BS05 GLC ? GO:0005886 ... Q9AJF5 17371546
    1646 2zyk:D (2.5) BS01 GLC ? GO:0005886 ... Q9AJF5 17371546
    1647 2zyk:D (2.5) BS02 GLC ? GO:0005886 ... Q9AJF5 17371546
    1648 2zyk:D (2.5) BS03 GLC ? GO:0005886 ... Q9AJF5 17371546
    1649 2zyk:D (2.5) BS04 GLC ? GO:0005886 ... Q9AJF5 17371546
    1650 2zyk:D (2.5) BS05 GLC ? GO:0005886 ... Q9AJF5 17371546
    1651 2zym:A (1.8) BS01 GLC ? GO:0005886 ... Q9AJF5 19490104
    1652 2zym:A (1.8) BS02 GLC ? GO:0005886 ... Q9AJF5 19490104
    1653 2zym:A (1.8) BS03 GLC ? GO:0005886 ... Q9AJF5 19490104
    1654 2zym:A (1.8) BS04 GLC ? GO:0005886 ... Q9AJF5 19490104
    1655 2zym:A (1.8) BS05 GLC ? GO:0005886 ... Q9AJF5 19490104
    1656 2zyn:A (1.7) BS01 GLC ? GO:0005886 ... Q9AJF5 19490104
    1657 2zyn:A (1.7) BS02 GLC ? GO:0005886 ... Q9AJF5 19490104
    1658 2zyn:A (1.7) BS03 GLC ? GO:0005886 ... Q9AJF5 19490104
    1659 2zyn:A (1.7) BS04 GLC ? GO:0005886 ... Q9AJF5 19490104
    1660 2zyo:A (1.55) BS01 GLC ? GO:0005886 ... Q9AJF5 19490104
    1661 2zyo:A (1.55) BS02 GLC ? GO:0005886 ... Q9AJF5 19490104
    1662 2zzl:A (2.03) BS01 GLC ? GO:0005216 ... P02945 19712684
    1663 3a0i:X (2.2) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 19362831
    1664 3a2m:B (1.84) BS01 GLC 3.8.1.5 GO:0003824 ... P59337 20645368
    1665 3a2s:X (2.2) BS01 GLC ? GO:0006811 ... Q5RT80 20351243
    1666 3a3c:A (2.5) BS01 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    1667 3a3c:A (2.5) BS02 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    1668 3a3h:A (1.64) BS01 GLC 3.2.1.4 GO:0000272 ... O85465 9718293
    1669 3a4a:A (1.6) BS01 GLC 3.2.1.10 GO:0000023 ... P53051 20812985
    1670 3a6t:A (1.96) BS01 GLC 3.6.1.55 GO:0000287 ... P08337 19864691
    1671 3a9g:A (2.39) BS01 GLC 1.1.5.2 GO:0046872 ... Q8ZUN8 20692227
    1672 3a9g:A (2.39) BS02 GLC 1.1.5.2 GO:0046872 ... Q8ZUN8 20692227
    1673 3a9h:A (2.5) BS01 GLC 1.1.5.2 GO:0046872 ... Q8ZUN8 20692227
    1674 3aib:G (3.09) BS01 GLC 2.4.1.5 GO:0009250 ... P13470 21354427
    1675 3amn:A (1.47) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1676 3amn:B (1.47) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1677 3amp:A (1.78) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1678 3amp:B (1.78) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1679 3amq:A (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1680 3amq:B (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1681 3amq:C (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1682 3amq:D (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q60032 21268113
    1683 3amv:A (2.1) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 10548038
    1684 3ao5:A (1.8) BS01 GLC 3.1.13.2
    3.1.26.13    		 GO:0003676 ... Q72498 21275048
    1685 3ao5:B (1.8) BS01 GLC 3.1.13.2
    3.1.26.13    		 GO:0003676 ... Q72498 21275048
    1686 3ap4:A (2.33) BS01 GLC ? GO:0030246 ... O00214 21288902
    1687 3ap4:B (2.33) BS01 GLC ? GO:0030246 ... O00214 21288902
    1688 3ap4:C (2.33) BS01 GLC ? GO:0030246 ... O00214 21288902
    1689 3ap4:D (2.33) BS01 GLC ? GO:0030246 ... O00214 21288902
    1690 3axh:A (1.8) BS01 GLC 3.2.1.10 GO:0000023 ... P53051 21925939
    1691 3axh:A (1.8) BS02 GLC 3.2.1.10 GO:0000023 ... P53051 21925939
    1692 3axi:A (1.4) BS01 GLC 3.2.1.10 GO:0000023 ... P53051 21925939
    1693 3azr:A (1.71) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    1694 3azr:B (1.71) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    1695 3azt:A (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    1696 3azt:D (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    1697 3b08:G (1.701) BS01 GLC ? N/A P0CG48 22139374
    1698 3b08:J (1.701) BS01 GLC ? N/A P0CG48 22139374
    1699 3b08:K (1.701) BS01 GLC 2.3.2.31 N/A Q9WUB0 22139374
    1700 3b75:B (2.3) BS01 GLC ? GO:0004601 ... P68871 N/A
    1701 3bc9:A (1.35) BS01 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1702 3bc9:A (1.35) BS03 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1703 3bc9:A (1.35) BS05 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1704 3bc9:A (1.35) BS07 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1705 3bc9:A (1.35) BS15 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1706 3bc9:A (1.35) BS16 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1707 3bcd:A (2.2) BS02 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1708 3bcd:A (2.2) BS03 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1709 3bcd:A (2.2) BS04 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1710 3bcd:A (2.2) BS05 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1711 3bcd:A (2.2) BS06 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1712 3bcd:A (2.2) BS07 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1713 3bcd:A (2.2) BS08 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1714 3bcd:A (2.2) BS09 GLC 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    1715 3blk:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1716 3blk:A (2.0) BS02 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1717 3blp:X (1.6) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1718 3blp:X (1.6) BS02 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1719 3bmw:A (1.6) BS01 GLC 2.4.1.19 GO:0003824 ... P26827 18422488
    1720 3bmw:A (1.6) BS02 GLC 2.4.1.19 GO:0003824 ... P26827 18422488
    1721 3bmw:A (1.6) BS03 GLC 2.4.1.19 GO:0003824 ... P26827 18422488
    1722 3bmw:A (1.6) BS05 GLC 2.4.1.19 GO:0003824 ... P26827 18422488
    1723 3bmw:A (1.6) BS06 GLC 2.4.1.19 GO:0003824 ... P26827 18422488
    1724 3byn:A (2.1) BS02 GLC 2.4.1.10 GO:0009758 ... P05655 N/A
    1725 3bz4:B (1.8) BS01 GLC N/A N/A N/A 18621718
    1726 3bz4:D (1.8) BS01 GLC N/A N/A N/A 18621718
    1727 3bz4:F (1.8) BS01 GLC N/A N/A N/A 18621718
    1728 3bz4:H (1.8) BS01 GLC N/A N/A N/A 18621718
    1729 3c4m:A (1.95) BS02 GLC ? GO:0004930 ... P0AEX9
    Q03431    		 18375760
    1730 3c4m:A (1.95) BS03 GLC ? GO:0004930 ... P0AEX9
    Q03431    		 18375760
    1731 3c4m:B (1.95) BS02 GLC ? GO:0004930 ... P0AEX9
    Q03431    		 18375760
    1732 3c4m:B (1.95) BS03 GLC ? GO:0004930 ... P0AEX9
    Q03431    		 18375760
    1733 3c6s:B (1.8) BS01 GLC N/A N/A N/A 18621718
    1734 3c6s:D (1.8) BS01 GLC N/A N/A N/A 18621718
    1735 3c6s:F (1.8) BS01 GLC N/A N/A N/A 18621718
    1736 3c6s:H (1.8) BS01 GLC N/A N/A N/A 18621718
    1737 3cgt:A (2.4) BS01 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    1738 3cgt:A (2.4) BS02 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    1739 3cgt:A (2.4) BS03 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    1740 3ck7:A (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1741 3ck7:A (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1742 3ck7:B (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1743 3ck7:B (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1744 3ck7:C (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1745 3ck7:C (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1746 3ck7:D (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1747 3ck7:D (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1748 3ck8:A (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1749 3ck8:A (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1750 3ck8:B (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1751 3ck8:B (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1752 3ck9:A (2.2) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1753 3ck9:A (2.2) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1754 3ck9:A (2.2) BS03 GLC ? GO:0005509 ... Q8A1G2 18611383
    1755 3ck9:B (2.2) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1756 3ck9:B (2.2) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1757 3ck9:B (2.2) BS03 GLC ? GO:0005509 ... Q8A1G2 18611383
    1758 3ckb:A (2.3) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1759 3ckb:A (2.3) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1760 3ckb:B (2.3) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    1761 3ckb:B (2.3) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    1762 3cop:A (2.3) BS01 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19244233
    1763 3cpu:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    1764 3cr9:A (3.49) BS01 GLC 3.4.21.- GO:0001503 ... O77811 N/A
    1765 3cx4:A (2.29) BS01 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1766 3cx4:A (2.29) BS02 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1767 3cx4:A (2.29) BS03 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1768 3cx4:A (2.29) BS04 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1769 3cx4:A (2.29) BS05 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1770 3cx4:A (2.29) BS06 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1771 3cx4:A (2.29) BS07 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1772 3cx4:A (2.29) BS08 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1773 3cx4:A (2.29) BS09 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    1774 3cx5:O (1.9) BS01 GLC 7.1.1.8 GO:0009055 ... P07143 18390544
    1775 3cxa:A (3.4) BS01 GLC ? GO:0001818 ... Q9GK12 N/A
    1776 3cxa:B (3.4) BS01 GLC ? GO:0001818 ... Q9GK12 N/A
    1777 3cxh:O (2.5) BS01 GLC 7.1.1.8 GO:0009055 ... P07143 18390544
    1778 3czg:A (1.8) BS01 GLC 3.2.1.48 GO:0005975 ... Q6UVM5 18565544
    1779 3czk:A (2.2) BS01 GLC 3.2.1.48 GO:0005975 ... Q6UVM5 18565544
    1780 3czl:A (2.0) BS01 GLC 3.2.1.48 GO:0005975 ... Q6UVM5 18565544
    1781 3d4c:A (2.9) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1782 3d4c:A (2.9) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1783 3d4g:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1784 3d4g:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1785 3d4g:B (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1786 3d4g:B (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1787 3d4g:C (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1788 3d4g:C (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1789 3d4g:D (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1790 3d4g:D (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1791 3d4g:E (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1792 3d4g:E (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1793 3d4g:F (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1794 3d4g:F (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1795 3d4g:G (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1796 3d4g:G (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1797 3d4g:H (2.3) BS01 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1798 3d4g:H (2.3) BS02 GLC ? GO:0005515 ... P0AEX9
    P10761    		 19052627
    1799 3dhp:A (1.5) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1800 3dhp:A (1.5) BS03 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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