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BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1w9x:A (2.1) BS03 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    1002 1w9x:A (2.1) BS04 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    1003 1w9x:A (2.1) BS05 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    1004 1wdq:A (1.28) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1005 1wdq:A (1.28) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1006 1wdq:A (1.28) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1007 1wdq:A (1.28) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1008 1wdr:A (1.35) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1009 1wdr:A (1.35) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1010 1wdr:A (1.35) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1011 1wdr:A (1.35) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1012 1wdr:A (1.35) BS05 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1013 1wds:A (1.64) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1014 1wds:A (1.64) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 15794648
    1015 1wlw:A (1.8) BS01 GLC ? GO:0005615 ... Q9YIC2 15740748
    1016 1wo2:A (2.01) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    1017 1wo2:A (2.01) BS03 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    1018 1wo2:A (2.01) BS04 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    1019 1wo2:A (2.01) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    1020 1wo2:A (2.01) BS07 GLC 3.2.1.1 GO:0003824 ... P00690 15736930
    1021 1wpc:A (1.9) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    1022 1wpc:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    1023 1wpc:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    1024 1wpc:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    1025 1wpc:A (1.9) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    1026 1ww4:B (2.3) BS01 GLC 3.1.21.- GO:0004518 ... Q6WY08 16051274
    1027 1x3w:A (3.0) BS02 GLC 3.5.1.52 GO:0000224 ... Q02890 15964983
    1028 1x3z:A (2.8) BS02 GLC 3.5.1.52 GO:0000224 ... Q02890 15964983
    1029 1x3z:A (2.8) BS03 GLC 3.5.1.52 GO:0000224 ... Q02890 15964983
    1030 1xc9:A (1.9) BS03 GLC 2.7.7.7 GO:0003676 ... P52026 15548515
    1031 1xcw:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 15736945
    1032 1xcx:A (1.9) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 15736945
    1033 1xif:A (1.6) BS01 GLC 5.3.1.5 GO:0000287 ... P24300 15299449
    1034 1y4c:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 15684085
    1035 1y4c:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 15684085
    1036 1ylj:A (0.98) BS01 GLC 3.5.2.6 GO:0008800 ... Q9L5C8 15811373
    1037 1ylp:A (1.2) BS01 GLC 3.5.2.6 GO:0008800 ... Q840M4 15811373
    1038 1ylt:A (1.1) BS01 GLC 3.5.2.6 GO:0008800 ... Q9L5C7 15811373
    1039 1ynp:A (1.25) BS01 GLC ? GO:0000166 ... Q9KE47 16242712
    1040 1ynq:A (1.3) BS01 GLC ? GO:0000166 ... Q9KE47 16242712
    1041 1ytv:A (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 16511036
    1042 1ytv:A (1.8) BS03 GLC ? GO:0005515 ... P0AEX9 16511036
    1043 1ytv:B (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 16511036
    1044 1ytv:B (1.8) BS03 GLC ? GO:0005515 ... P0AEX9 16511036
    1045 1yw1:A (2.81) BS01 GLC 1.14.14.- GO:0004497 ... O34974 N/A
    1046 1z0m:A (1.91) BS01 GLC ? N/A P80386 16216577
    1047 1z0m:A (1.91) BS02 GLC ? N/A P80386 16216577
    1048 1z0m:B (1.91) BS01 GLC ? N/A P80386 16216577
    1049 1z0m:B (1.91) BS02 GLC ? N/A P80386 16216577
    1050 1z0m:C (1.91) BS01 GLC ? N/A P80386 16216577
    1051 1z0m:C (1.91) BS02 GLC ? N/A P80386 16216577
    1052 1z0n:A (1.49) BS01 GLC ? N/A P80386 16216577
    1053 1z0n:A (1.49) BS02 GLC ? N/A P80386 16216577
    1054 1z0n:B (1.49) BS01 GLC ? N/A P80386 16216577
    1055 1z0n:B (1.49) BS02 GLC ? N/A P80386 16216577
    1056 1z0n:C (1.49) BS01 GLC ? N/A P80386 16216577
    1057 1z0n:C (1.49) BS02 GLC ? N/A P80386 16216577
    1058 1z32:X (1.6) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1059 1z8d:A (2.3) BS01 GLC 2.4.1.1 GO:0000166 ... P11217 16523484
    1060 1zs2:A (2.16) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    1061 1zs2:A (2.16) BS02 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    1062 1zs2:A (2.16) BS03 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    1063 1zs2:A (2.16) BS04 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    1064 1zs2:A (2.16) BS05 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    1065 2a2q:L (1.8) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 16757484
    1066 2add:A (2.5) BS01 GLC 3.2.1.80 GO:0004553 ... Q93X60 17335500
    1067 2aep:A (2.1) BS01 GLC 3.2.1.18 GO:0004308 ... Q9DL16 16384583
    1068 2aep:A (2.1) BS03 GLC 3.2.1.18 GO:0004308 ... Q9DL16 16384583
    1069 2aep:H (2.1) BS01 GLC ? GO:0002250 ... P84751 16384583
    1070 2aep:L (2.1) BS01 GLC ? GO:0002250 ... P84750 16384583
    1071 2aer:L (1.87) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 16757484
    1072 2asv:A (1.95) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1073 2asv:A (1.95) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1074 2asv:A (1.95) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1075 2asv:A (1.95) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1076 2asv:B (1.95) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1077 2asv:B (1.95) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1078 2asv:B (1.95) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1079 2asv:B (1.95) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 N/A
    1080 2at1:A (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2405902
    1081 2at1:C (2.8) BS01 GLC 2.1.3.2 GO:0004070 ... P0A786 2405902
    1082 2ati:A (1.9) BS01 GLC 2.4.1.1 GO:0000166 ... P06737 16190745
    1083 2ati:B (1.9) BS02 GLC 2.4.1.1 GO:0000166 ... P06737 16190745
    1084 2av6:A (2.01) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1085 2av6:A (2.01) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1086 2av6:A (2.01) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1087 2av6:A (2.01) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1088 2av6:B (2.01) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1089 2av6:B (2.01) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1090 2av6:B (2.01) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1091 2av6:B (2.01) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1092 2aw3:A (2.2) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1093 2aw3:A (2.2) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1094 2aw3:A (2.2) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1095 2aw3:A (2.2) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1096 2aw3:B (2.2) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1097 2aw3:B (2.2) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1098 2aw3:B (2.2) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1099 2azd:A (2.16) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1100 2azd:A (2.16) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1101 2azd:B (2.16) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1102 2azd:B (2.16) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 18164678
    1103 2b1q:A (2.2) BS01 GLC 3.1.3.24 GO:0000287 ... P74325 17510968
    1104 2b1q:A (2.2) BS02 GLC 3.1.3.24 GO:0000287 ... P74325 17510968
    1105 2b3b:A (1.95) BS01 GLC ? N/A Q72KX2 16904687 MOAD: Kd=0.08uM
    1106 2b3b:B (1.95) BS01 GLC ? N/A Q72KX2 16904687 MOAD: Kd=0.08uM
    1107 2b3b:E (1.95) BS01 GLC ? N/A Q72KX2 16904687 MOAD: Kd=0.08uM
    1108 2b3b:F (1.95) BS01 GLC ? N/A Q72KX2 16904687 MOAD: Kd=0.08uM
    1109 2b65:A (1.5) BS01 GLC 3.4.21.- GO:0005576 ... P24627 N/A
    1110 2b65:A (1.5) BS02 GLC 3.4.21.- GO:0005576 ... P24627 N/A
    1111 2b7y:A (3.0) BS01 GLC ? GO:0030246 ... P02871 3775378
    1112 2b7y:B (3.0) BS01 GLC ? GO:0030246 ... P02871 3775378
    1113 2b7y:C (3.0) BS01 GLC ? GO:0030246 ... P02871 3775378
    1114 2b7y:D (3.0) BS01 GLC ? GO:0030246 ... P02871 3775378
    1115 2b8o:L (2.8) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 N/A
    1116 2be2:A (2.43) BS01 GLC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 16302798
    1117 2be2:B (2.43) BS01 GLC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 16302798
    1118 2bhy:A (1.5) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1119 2bhy:A (1.5) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1120 2bhy:A (1.5) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1121 2bhy:A (1.5) BS04 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1122 2bhy:A (1.5) BS05 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1123 2bhy:A (1.5) BS06 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1124 2bhy:A (1.5) BS07 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1125 2bhy:A (1.5) BS08 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1126 2bhy:A (1.5) BS09 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1127 2bhy:A (1.5) BS10 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1128 2bhy:A (1.5) BS11 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1129 2bhz:A (1.2) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1130 2bhz:A (1.2) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1131 2bhz:A (1.2) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1132 2bhz:A (1.2) BS04 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1133 2bhz:A (1.2) BS05 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1134 2bhz:A (1.2) BS06 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1135 2bhz:A (1.2) BS07 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1136 2bhz:A (1.2) BS08 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1137 2bhz:A (1.2) BS09 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1138 2bhz:A (1.2) BS10 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1139 2bhz:A (1.2) BS11 GLC 3.2.1.141 GO:0004553 ... Q9RX51 15784255
    1140 2bis:A (2.8) BS01 GLC 2.4.1.21 GO:0004373 ... Q9V2J8 16319074
    1141 2bis:C (2.8) BS01 GLC 2.4.1.21 GO:0004373 ... Q9V2J8 16319074
    1142 2bqp:A (1.9) BS01 GLC ? GO:0005537 ... P02867 N/A
    1143 2bqp:B (1.9) BS01 GLC ? GO:0005537 ... P02867 N/A
    1144 2bvl:A (2.2) BS03 GLC 2.4.1.-
    3.4.22.-
    GO:0016757 ... P18177 16054646
    1145 2bvm:A (2.55) BS03 GLC 2.4.1.-
    3.4.22.-
    GO:0016757 ... P18177 16054646
    1146 2bvw:B (1.7) BS01 GLC 3.2.1.91 GO:0004553 ... Q9C1S9 10413461
    1147 2bwa:A (1.68) BS01 GLC 3.2.1.4 GO:0000272 ... O33897 16343530
    1148 2bwa:B (1.68) BS01 GLC 3.2.1.4 GO:0000272 ... O33897 16343530
    1149 2bwc:A (2.15) BS01 GLC 3.2.1.4 GO:0000272 ... O33897 16343530
    1150 2bwc:B (2.15) BS04 GLC 3.2.1.4 GO:0000272 ... O33897 16343530
    1151 2bxy:A (1.75) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1152 2bxy:A (1.75) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1153 2bxy:A (1.75) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1154 2bxy:A (1.75) BS04 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1155 2bxz:A (1.75) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1156 2bxz:A (1.75) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1157 2bxz:A (1.75) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1158 2bxz:A (1.75) BS04 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1159 2by0:A (1.55) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1160 2by0:A (1.55) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1161 2by0:A (1.55) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1162 2by1:A (1.55) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1163 2by1:A (1.55) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1164 2by1:A (1.55) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1165 2by2:A (1.5) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1166 2by2:A (1.5) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1167 2by2:A (1.5) BS03 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1168 2by3:A (1.5) BS01 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1169 2by3:A (1.5) BS02 GLC 3.2.1.141 GO:0004553 ... Q9RX51 16421442
    1170 2c3h:A (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1171 2c3h:A (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1172 2c3h:A (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1173 2c3h:B (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1174 2c3h:B (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1175 2c3h:B (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1176 2c3h:C (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1177 2c3h:C (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1178 2c3h:C (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1179 2c3h:D (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1180 2c3h:D (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1181 2c3h:D (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1182 2c3h:E (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1183 2c3h:E (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1184 2c3h:F (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1185 2c3h:F (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1186 2c3h:G (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1187 2c3h:G (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1188 2c3h:G (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1189 2c3h:H (2.24) BS01 GLC ? N/A Q9KFR4 16230347
    1190 2c3h:H (2.24) BS02 GLC ? N/A Q9KFR4 16230347
    1191 2c3h:H (2.24) BS03 GLC ? N/A Q9KFR4 16230347
    1192 2c3w:A (1.81) BS01 GLC ? GO:2001070 ... Q9KFR4 16230347
    1193 2c3w:A (1.81) BS02 GLC ? GO:2001070 ... Q9KFR4 16230347
    1194 2c3w:A (1.81) BS03 GLC ? GO:2001070 ... Q9KFR4 16230347
    1195 2c3w:A (1.81) BS04 GLC ? GO:2001070 ... Q9KFR4 16230347
    1196 2c3w:A (1.81) BS05 GLC ? GO:2001070 ... Q9KFR4 16230347
    1197 2c3w:B (1.81) BS01 GLC ? GO:2001070 ... Q9KFR4 16230347
    1198 2c3w:B (1.81) BS02 GLC ? GO:2001070 ... Q9KFR4 16230347
    1199 2c3w:B (1.81) BS03 GLC ? GO:2001070 ... Q9KFR4 16230347
    1200 2c3w:B (1.81) BS04 GLC ? GO:2001070 ... Q9KFR4 16230347

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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