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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 8dl2:C (1.99) BS04 GLC N/A GO:0005975 ... N/A 37500984
    5802 8dl2:C (1.99) BS06 GLC N/A GO:0005975 ... N/A 37500984
    5803 8dl2:D (1.99) BS01 GLC N/A GO:0005975 ... N/A 37500984
    5804 8dl2:D (1.99) BS03 GLC N/A GO:0005975 ... N/A 37500984
    5805 8dl2:D (1.99) BS05 GLC N/A GO:0005975 ... N/A 37500984
    5806 8dl2:D (1.99) BS07 GLC N/A GO:0005975 ... N/A 37500984
    5807 8dzd:A (1.901) BS01 GLC ? N/A A0QY10 N/A
    5808 8dzd:B (1.901) BS01 GLC ? N/A A0QY10 N/A
    5809 8e0p:A (2.33) BS02 GLC ? GO:0001942 ... C3SHQ8
    Q3U128    		 37155902
    5810 8e0p:B (2.33) BS02 GLC ? GO:0001942 ... C3SHQ8
    Q3U128    		 37155902
    5811 8e0p:C (2.33) BS02 GLC ? GO:0001942 ... C3SHQ8
    Q3U128    		 37155902
    5812 8e0p:D (2.33) BS02 GLC ? GO:0001942 ... C3SHQ8
    Q3U128    		 37155902
    5813 8e0s:A (1.65) BS01 GLC 2.5.1.54 GO:0003849 ... P0AB91 36197914
    5814 8ekx:A (1.55) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5815 8ekx:A (1.55) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5816 8el0:A (1.917) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5817 8el0:A (1.917) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5818 8el1:A (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5819 8el1:A (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5820 8el1:B (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5821 8el1:B (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5822 8el1:C (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5823 8el1:C (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5824 8el1:D (2.406) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5825 8el1:D (2.406) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 37880389
    5826 8f0m:B (2.44) BS01 GLC N/A N/A N/A 37399416
    5827 8fjc:A (2.5) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5828 8fjc:B (2.5) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5829 8fk4:A (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5830 8fk4:B (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5831 8fk4:C (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5832 8fk4:E (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5833 8fk4:E (3.25) BS02 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5834 8fk4:F (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5835 8fk4:H (3.25) BS01 GLC 2.4.1.5 GO:0009250 ... P08987 37158310
    5836 8fxt:A (1.53) BS02 GLC ? GO:0005509 ... P0AEE5 37598249
    5837 8fyy:A (2.8) BS01 GLC 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    5838 8fyz:B (3.4) BS01 GLC 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    5839 8fz1:A (2.7) BS01 GLC 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    5840 8fz1:B (2.7) BS01 GLC 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    5841 8g3s:A (1.4) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5842 8g3s:A (1.4) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5843 8g3t:A (1.83) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5844 8g3t:A (1.83) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5845 8g3u:A (1.94) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5846 8g3u:A (1.94) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5847 8g3w:A (1.78) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5848 8g3w:A (1.78) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5849 8g3x:A (1.46) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5850 8g3x:A (1.46) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5851 8g3y:A (1.7) BS01 GLC ? GO:0008643 ... Q07820 37114951
    5852 8g3y:A (1.7) BS02 GLC ? GO:0008643 ... Q07820 37114951
    5853 8g8w:B (3.8) BS01 GLC ? GO:0005515 ... P0AEX9 37256948
    5854 8h68:A (2.2) BS01 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9    		 36764665
    5855 8h68:A (2.2) BS02 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9    		 36764665
    5856 8h68:A (2.2) BS03 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9    		 36764665
    5857 8h68:A (2.2) BS04 GLC 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9    		 36764665
    5858 8hpl:E (4.29) BS01 GLC ? N/A A0R2C3 37619560
    5859 8hpm:E (3.82) BS01 GLC ? N/A A0R2C3 37619560
    5860 8hpm:E (3.82) BS02 GLC ? N/A A0R2C3 37619560
    5861 8hpn:E (4.55) BS01 GLC ? N/A A0R2C3 37619560
    5862 8hpr:E (3.75) BS01 GLC ? N/A A0R2C3 37619560
    5863 8hpr:E (3.75) BS02 GLC ? N/A A0R2C3 37619560
    5864 8hps:A (3.51) BS01 GLC ? GO:0005886 ... A0R2C2 37619560
    5865 8hw3:A (2.66) BS01 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5866 8hw3:A (2.66) BS03 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5867 8hw3:B (2.66) BS01 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5868 8hw3:B (2.66) BS03 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5869 8hwk:A (2.9) BS01 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5870 8hwk:A (2.9) BS02 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5871 8hwk:A (2.9) BS03 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5872 8hwk:B (2.9) BS01 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5873 8hwk:B (2.9) BS02 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5874 8hwk:B (2.9) BS03 GLC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    5875 8ibk:A (1.69) BS01 GLC ? GO:0004556 ... A0A2Z5WH92 37049872
    5876 8ibk:A (1.69) BS02 GLC ? GO:0004556 ... A0A2Z5WH92 37049872
    5877 8ibk:A (1.69) BS03 GLC ? GO:0004556 ... A0A2Z5WH92 37049872
    5878 8ids:A (1.5) BS01 GLC ? GO:0004556 ... A0A2Z5WH92 37049872
    5879 8ids:A (1.5) BS02 GLC ? GO:0004556 ... A0A2Z5WH92 37049872
    5880 8iiy:A (2.15) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5881 8iiy:A (2.15) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5882 8iiy:A (2.15) BS05 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5883 8iiy:A (2.15) BS06 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5884 8iiz:A (2.1) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5885 8iiz:A (2.1) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    5886 8ill:B (2.2) BS01 GLC N/A GO:0006091 ... N/A 38036853
    5887 8iox:A (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5888 8iox:A (2.95) BS02 GLC ? GO:0003824 ... P40120 37735577
    5889 8iox:C (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5890 8iox:D (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5891 8iox:E (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5892 8iox:E (2.95) BS02 GLC ? GO:0003824 ... P40120 37735577
    5893 8iox:F (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5894 8iox:G (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5895 8iox:G (2.95) BS02 GLC ? GO:0003824 ... P40120 37735577
    5896 8iox:H (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5897 8iox:I (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5898 8iox:J (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5899 8iox:K (2.95) BS01 GLC ? GO:0003824 ... P40120 37735577
    5900 8iq9:A (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    5901 8iq9:A (1.58) BS05 GLC ? N/A A0A6M3YLW2 38349137
    5902 8iq9:B (1.58) BS04 GLC ? N/A A0A6M3YLW2 38349137
    5903 8iq9:B (1.58) BS06 GLC ? N/A A0A6M3YLW2 38349137
    5904 8iq9:C (1.58) BS01 GLC ? N/A A0A6M3YLW2 38349137
    5905 8iq9:C (1.58) BS03 GLC ? N/A A0A6M3YLW2 38349137
    5906 8iq9:C (1.58) BS07 GLC ? N/A A0A6M3YLW2 38349137
    5907 8iu9:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    5908 8iu9:A (1.8) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    5909 8iua:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    5910 8iua:A (1.8) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    5911 8iub:A (1.18) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    5912 8iub:A (1.18) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    5913 8iub:A (1.18) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    5914 8iuc:A (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    5915 8iuc:B (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    5916 8iuc:C (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    5917 8j25:A (2.6) BS01 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5918 8j25:A (2.6) BS02 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5919 8j2p:A (2.09) BS01 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5920 8j2p:A (2.09) BS02 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5921 8j2p:E (2.09) BS01 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5922 8j2p:E (2.09) BS02 GLC 2.3.2.- GO:0005515 ... P0AEX9
    P29590    		 37655965
    5923 8ja7:E (3.02) BS01 GLC ? N/A P9WGU9 37603751
    5924 8ja7:E (3.02) BS02 GLC ? N/A P9WGU9 37603751
    5925 8ja8:A (1.6) BS01 GLC ? N/A P9WGU9 37603751
    5926 8ja8:A (1.6) BS02 GLC ? N/A P9WGU9 37603751
    5927 8ja9:A (2.1) BS02 GLC ? N/A P9WGU9 37603751
    5928 8jac:A (2.1) BS02 GLC ? N/A P9WGU9 37603751
    5929 8jad:A (2.3) BS02 GLC ? N/A P9WGU9 37603751
    5930 8jmh:A (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    5931 8jmh:B (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    5932 8jmh:C (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    5933 8jmh:D (2.5) BS01 GLC ? GO:0001582 ... P83293 38305684
    5934 8jmi:A (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    5935 8jmi:B (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    5936 8jmi:C (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    5937 8jmi:D (2.6) BS02 GLC ? GO:0001582 ... P83293 38305684
    5938 8jxr:C (3.57) BS01 GLC N/A N/A P06654
    P0A015
    P0AEX9
    P38507    		 39094559
    5939 8jxr:C (3.57) BS02 GLC N/A N/A P06654
    P0A015
    P0AEX9
    P38507    		 39094559
    5940 8jyx:A (2.35) BS01 GLC ? GO:0005515 ... P0AEX9
    Q7SBA0    		 38662913
    5941 8jyx:A (2.35) BS02 GLC ? GO:0005515 ... P0AEX9
    Q7SBA0    		 38662913
    5942 8jyx:B (2.35) BS01 GLC ? GO:0005515 ... P0AEX9
    Q7SBA0    		 38662913
    5943 8jyx:B (2.35) BS02 GLC ? GO:0005515 ... P0AEX9
    Q7SBA0    		 38662913
    5944 8kaq:A (2.13) BS04 GLC N/A N/A B1W1N0 N/A
    5945 8kaq:B (2.13) BS01 GLC N/A N/A B1W1N0 N/A
    5946 8kaq:C (2.13) BS04 GLC N/A N/A B1W1N0 N/A
    5947 8ok4:A (1.23) BS03 GLC ? GO:0005886 ... B3GVS7 37656766
    5948 8ok5:A (1.27) BS03 GLC ? N/A B3GVS7 37656766
    5949 8ok6:A (1.75) BS03 GLC ? GO:0005886 ... B3GVS7 37656766
    5950 8ok6:C (1.75) BS02 GLC ? GO:0005886 ... B3GVS7 37656766
    5951 8ok8:C (3.22) BS01 GLC ? N/A M4SXH7 37656766
    5952 8ok8:C (3.22) BS02 GLC ? N/A M4SXH7 37656766
    5953 8ok8:E (3.22) BS01 GLC ? N/A M4SXH7 37656766
    5954 8ok8:E (3.22) BS02 GLC ? N/A M4SXH7 37656766
    5955 8ok8:G (3.22) BS01 GLC ? N/A M4SXH7 37656766
    5956 8ok8:G (3.22) BS02 GLC ? N/A M4SXH7 37656766
    5957 8ok8:I (3.22) BS01 GLC ? N/A M4SXH7 37656766
    5958 8ok8:I (3.22) BS02 GLC ? N/A M4SXH7 37656766
    5959 8ok8:K (3.22) BS01 GLC ? N/A M4SXH7 37656766
    5960 8ok8:K (3.22) BS02 GLC ? N/A M4SXH7 37656766
    5961 8onh:A (2.59) BS03 GLC ? N/A B3GVS7 37656766
    5962 8onh:B (2.59) BS04 GLC ? N/A B3GVS7 37656766
    5963 8onh:C (2.59) BS02 GLC ? N/A B3GVS7 37656766
    5964 8onh:D (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5965 8onh:E (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5966 8onh:F (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5967 8onh:H (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5968 8onh:I (2.59) BS02 GLC ? N/A B3GVS7 37656766
    5969 8onh:J (2.59) BS03 GLC ? N/A B3GVS7 37656766
    5970 8onh:K (2.59) BS02 GLC ? N/A B3GVS7 37656766
    5971 8onh:L (2.59) BS02 GLC ? N/A B3GVS7 37656766
    5972 8onh:M (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5973 8onh:N (2.59) BS03 GLC ? N/A B3GVS7 37656766
    5974 8onh:O (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5975 8onh:P (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5976 8onh:Q (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5977 8onh:R (2.59) BS01 GLC ? N/A B3GVS7 37656766
    5978 8opx:C (2.9) BS01 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    5979 8opx:D (2.9) BS01 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    5980 8opx:D (2.9) BS02 GLC 2.3.1.- GO:0005886 ... O53871 39012716
    5981 8orp:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P08144 37513201
    5982 8orp:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P08144 37513201
    5983 8orp:B (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P08144 37513201
    5984 8orp:B (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P08144 37513201
    5985 8pn9:D (3.61) BS01 GLC ? GO:0001824 ... P61803 38670073
    5986 8qso:A (2.106) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 38306405
    5987 8qso:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 38306405
    5988 8r2o:A (3.23) BS01 GLC N/A N/A A0A4P1LXE0
    P42858    		 N/A
    5989 8r2o:A (3.23) BS02 GLC N/A N/A A0A4P1LXE0
    P42858    		 N/A
    5990 8r2o:B (3.23) BS01 GLC N/A N/A A0A4P1LXE0
    P42858    		 N/A
    5991 8r2o:B (3.23) BS02 GLC N/A N/A A0A4P1LXE0
    P42858    		 N/A
    5992 8rg8:A (1.21) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    5993 8rg8:A (1.21) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    5994 8rg8:A (1.21) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    5995 8rg9:A (1.25) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    5996 8rg9:A (1.25) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    5997 8rg9:A (1.25) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    5998 8rgb:A (1.39) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    5999 8rgb:A (1.39) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    6000 8rgb:A (1.39) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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