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BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 6gya:A (2.95) BS02 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4602 6gya:A (2.95) BS06 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4603 6gya:A (2.95) BS07 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4604 6gya:B (2.95) BS01 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4605 6gya:B (2.95) BS02 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4606 6gya:B (2.95) BS06 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4607 6gya:C (2.95) BS01 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4608 6gya:C (2.95) BS05 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4609 6gya:D (2.95) BS01 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4610 6gya:D (2.95) BS02 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4611 6gya:D (2.95) BS03 GLC ? GO:0004553 ... A0A3P8MUS3 30644839
    4612 6h64:A (1.8) BS01 GLC ? GO:0030246 ... P17931 30298550
    4613 6h64:B (1.8) BS01 GLC ? GO:0030246 ... P17931 30298550
    4614 6h64:C (1.8) BS01 GLC ? GO:0030246 ... P17931 30298550
    4615 6h64:D (1.8) BS01 GLC ? GO:0030246 ... P17931 30298550
    4616 6h64:E (1.8) BS02 GLC ? GO:0030246 ... P17931 30298550
    4617 6h64:F (1.8) BS02 GLC ? GO:0030246 ... P17931 30298550
    4618 6hak:B (3.95) BS01 GLC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 30902895
    4619 6hd8:A (2.4) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    4620 6hd8:A (2.4) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    4621 6hd9:A (3.5) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    4622 6hd9:A (3.5) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    4623 6hda:A (3.8) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    4624 6hda:A (3.8) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    4625 6hdb:A (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    4626 6hdb:A (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    4627 6hdc:A (3.4) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    4628 6hdc:A (3.4) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    4629 6hmg:A (1.27) BS02 GLC ? GO:0004559 ... D6D1V7 30427198 PDBbind: -logKd/Ki=4.94, Kd=11.5uM
    4630 6hmh:A (1.03) BS04 GLC ? GO:0004559 ... D6D1V7 30427198
    4631 6htv:A (3.9) BS01 GLC 2.4.1.5 GO:0009250 ... A0A2H4A2Q1 31140266
    4632 6hur:A (1.297) BS01 GLC ? GO:0015768 ... A0A1S2VYK0 31489370
    4633 6hus:A (1.409) BS01 GLC ? GO:0015768 ... A0A1S2VYK0 31489370
    4634 6hvm:B (2.0) BS01 GLC 2.7.7.85 GO:0004016 ... Q8Y5E4 31118276
    4635 6hvn:A (2.234) BS01 GLC 2.7.7.85 GO:0004016 ... Q8Y5E4 31118276
    4636 6i0w:A (1.04) BS04 GLC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    4637 6i1u:A (1.08) BS03 GLC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    4638 6i4y:A (2.91) BS01 GLC ? GO:0002039 ... O43715
    P0AEX9    		 30850607
    4639 6i4y:A (2.91) BS02 GLC ? GO:0002039 ... O43715
    P0AEX9    		 30850607
    4640 6imv:A (2.0) BS01 GLC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    4641 6imv:B (2.0) BS01 GLC 3.2.1.71 GO:0033913 ... A0A4V8H012 30926603
    4642 6iyg:A (1.5) BS01 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4643 6iyg:A (1.5) BS02 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4644 6iyg:A (1.5) BS03 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4645 6iyg:A (1.5) BS04 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4646 6j34:A (1.498) BS01 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4647 6j34:A (1.498) BS02 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4648 6j34:A (1.498) BS03 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4649 6j34:A (1.498) BS04 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4650 6j34:A (1.498) BS05 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4651 6j3x:A (1.62) BS01 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4652 6j3x:A (1.62) BS02 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4653 6j3x:A (1.62) BS03 GLC 3.2.1.60 GO:0004556 ... P22963 N/A
    4654 6j4h:A (1.641) BS01 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4655 6j4h:A (1.641) BS02 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4656 6j4h:A (1.641) BS03 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4657 6j4h:A (1.641) BS04 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4658 6j4h:A (1.641) BS05 GLC 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    4659 6j9w:A (1.8) BS01 GLC ? N/A Q5SLD7 31608555
    4660 6j9w:A (1.8) BS02 GLC ? N/A Q5SLD7 31608555
    4661 6j9y:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4662 6j9y:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    4663 6jad:A (1.9) BS02 GLC ? N/A Q5SLD7 31608555 PDBbind: -logKd/Ki=4.32, Kd=48.3uM
    4664 6jag:A (1.85) BS01 GLC ? N/A Q5SLD7 31608555
    4665 6jah:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4666 6jai:A (2.1) BS01 GLC ? N/A Q5SLD7 31608555
    4667 6jai:A (2.1) BS02 GLC ? N/A Q5SLD7 31608555
    4668 6jam:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4669 6jam:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    4670 6jan:A (1.77) BS01 GLC ? N/A Q5SLD7 31608555
    4671 6jan:A (1.77) BS02 GLC ? N/A Q5SLD7 31608555
    4672 6jao:A (1.77) BS02 GLC ? N/A Q5SLD7 31608555 PDBbind: -logKd/Ki=4.86, Kd=13.8uM
    4673 6jap:A (1.77) BS01 GLC ? N/A Q5SLD7 31608555
    4674 6jaq:A (1.95) BS01 GLC ? N/A Q5SLD7 31608555 MOAD: Kd=111.23uM
    PDBbind: -logKd/Ki=3.95, Kd=111.23uM
    4675 6jar:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4676 6jar:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    4677 6jaz:A (1.85) BS01 GLC ? N/A Q5SLD7 31608555
    4678 6jaz:A (1.85) BS02 GLC ? N/A Q5SLD7 31608555
    4679 6jb0:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4680 6jb0:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    4681 6jb4:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    4682 6jb4:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    4683 6jba:A (2.0) BS02 GLC ? N/A Q5SLD7 31608555
    4684 6jbb:A (1.95) BS01 GLC ? N/A Q5SLD7 31608555
    4685 6jbe:A (1.75) BS01 GLC ? N/A Q5SLD7 31608555 MOAD: Kd=19.8uM
    PDBbind: -logKd/Ki=4.70, Kd=19.80uM
    4686 6jbr:A (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4687 6jbr:B (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4688 6jbr:D (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4689 6jbr:F (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4690 6jbr:H (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4691 6jbr:K (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4692 6jbr:M (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4693 6jbr:O (2.03) BS01 GLC 2.4.1.15 GO:0003824 ... G4NHF4 31455720
    4694 6jeq:A (1.802) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4695 6jeq:A (1.802) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4696 6jeq:A (1.802) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4697 6jeq:A (1.802) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4698 6jfj:A (1.932) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4699 6jfj:A (1.932) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4700 6jfj:A (1.932) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4701 6jfj:A (1.932) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4702 6jfj:A (1.932) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4703 6jfj:A (1.932) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4704 6jfj:A (1.932) BS07 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4705 6jfx:A (1.981) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4706 6jfx:A (1.981) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4707 6jfx:A (1.981) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4708 6jfx:A (1.981) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4709 6jfx:A (1.981) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4710 6jfx:A (1.981) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    4711 6jgc:A (2.36) BS01 GLC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    4712 6jgc:A (2.36) BS02 GLC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    4713 6jhh:A (2.025) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4714 6jhh:A (2.025) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4715 6jhh:A (2.025) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4716 6jhh:A (2.025) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4717 6jhh:A (2.025) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4718 6jhh:A (2.025) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4719 6jhh:A (2.025) BS07 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4720 6jhi:A (2.319) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4721 6jhi:A (2.319) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4722 6jhi:A (2.319) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4723 6jhi:A (2.319) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4724 6jhi:A (2.319) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    4725 6jia:A (1.9) BS01 GLC N/A GO:0004553 ... N/A 32917756
    4726 6jr7:A (1.75) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4727 6jr7:A (1.75) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4728 6jr7:B (1.75) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4729 6jr7:B (1.75) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4730 6jr7:C (1.75) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4731 6jr7:C (1.75) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4732 6jr7:D (1.75) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4733 6jr7:D (1.75) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4734 6jr8:A (1.8) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4735 6jr8:A (1.8) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4736 6jr8:B (1.8) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4737 6jr8:B (1.8) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4738 6jr8:C (1.8) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4739 6jr8:C (1.8) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4740 6jr8:D (1.8) BS01 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4741 6jr8:D (1.8) BS02 GLC 3.2.1.20 GO:0003824 ... A5FBI1 31552702
    4742 6jwi:A (2.55) BS01 GLC ? GO:0006511 ... P33755 31836717
    4743 6jwi:A (2.55) BS02 GLC ? GO:0006511 ... P33755 31836717
    4744 6jwi:A (2.55) BS03 GLC ? GO:0006511 ... P33755 31836717
    4745 6jwi:A (2.55) BS04 GLC ? GO:0006511 ... P33755 31836717
    4746 6jwi:A (2.55) BS05 GLC ? GO:0006511 ... P33755 31836717
    4747 6jwi:A (2.55) BS06 GLC ? GO:0006511 ... P33755 31836717
    4748 6jwi:A (2.55) BS07 GLC ? GO:0006511 ... P33755 31836717
    4749 6jwi:A (2.55) BS08 GLC ? GO:0006511 ... P33755 31836717
    4750 6jwi:A (2.55) BS09 GLC ? GO:0006511 ... P33755 31836717
    4751 6jwi:E (2.55) BS01 GLC ? GO:0006511 ... P33755 31836717
    4752 6jwi:E (2.55) BS02 GLC ? GO:0006511 ... P33755 31836717
    4753 6jwi:E (2.55) BS03 GLC ? GO:0006511 ... P33755 31836717
    4754 6jwi:E (2.55) BS04 GLC ? GO:0006511 ... P33755 31836717
    4755 6jwi:E (2.55) BS05 GLC ? GO:0006511 ... P33755 31836717
    4756 6jwi:E (2.55) BS06 GLC ? GO:0006511 ... P33755 31836717
    4757 6k0n:A (1.6) BS01 GLC ? N/A A0A068PS59 31788942
    4758 6k0n:A (1.6) BS02 GLC ? N/A A0A068PS59 31788942
    4759 6k0n:A (1.6) BS03 GLC ? N/A A0A068PS59 31788942
    4760 6k0n:A (1.6) BS04 GLC ? N/A A0A068PS59 31788942
    4761 6k0n:A (1.6) BS05 GLC ? N/A A0A068PS59 31788942
    4762 6k0n:A (1.6) BS06 GLC ? N/A A0A068PS59 31788942
    4763 6k0p:A (1.424) BS01 GLC ? N/A A0A068PS59 31788942
    4764 6k0p:A (1.424) BS02 GLC ? N/A A0A068PS59 31788942
    4765 6k0p:A (1.424) BS03 GLC ? N/A A0A068PS59 31788942
    4766 6k0p:A (1.424) BS04 GLC ? N/A A0A068PS59 31788942
    4767 6k0p:A (1.424) BS05 GLC ? N/A A0A068PS59 31788942
    4768 6k0p:A (1.424) BS06 GLC ? N/A A0A068PS59 31788942
    4769 6k0q:A (1.564) BS01 GLC ? N/A A0A068PS59 31788942
    4770 6k0q:A (1.564) BS02 GLC ? N/A A0A068PS59 31788942
    4771 6k0q:A (1.564) BS03 GLC ? N/A A0A068PS59 31788942
    4772 6k0q:A (1.564) BS04 GLC ? N/A A0A068PS59 31788942
    4773 6k0q:A (1.564) BS06 GLC ? N/A A0A068PS59 31788942
    4774 6k0s:A (1.534) BS01 GLC ? N/A A0A068PS59 31788942
    4775 6k0s:A (1.534) BS02 GLC ? N/A A0A068PS59 31788942
    4776 6k0s:A (1.534) BS03 GLC ? N/A A0A068PS59 31788942
    4777 6k0s:A (1.534) BS04 GLC ? N/A A0A068PS59 31788942
    4778 6k0s:A (1.534) BS06 GLC ? N/A A0A068PS59 31788942
    4779 6k0u:A (1.95) BS01 GLC ? N/A A0A068PS59 31788942
    4780 6k0u:A (1.95) BS02 GLC ? N/A A0A068PS59 31788942
    4781 6k0u:A (1.95) BS03 GLC ? N/A A0A068PS59 31788942
    4782 6k0u:A (1.95) BS04 GLC ? N/A A0A068PS59 31788942
    4783 6k0u:A (1.95) BS05 GLC ? N/A A0A068PS59 31788942
    4784 6k0v:A (2.504) BS01 GLC ? N/A A0A068PS59 31788942
    4785 6k0v:A (2.504) BS02 GLC ? N/A A0A068PS59 31788942
    4786 6k0v:A (2.504) BS03 GLC ? N/A A0A068PS59 31788942
    4787 6k0v:A (2.504) BS04 GLC ? N/A A0A068PS59 31788942
    4788 6k0v:A (2.504) BS05 GLC ? N/A A0A068PS59 31788942
    4789 6k0v:A (2.504) BS06 GLC ? N/A A0A068PS59 31788942
    4790 6k0v:B (2.504) BS02 GLC ? N/A A0A068PS59 31788942
    4791 6k0v:B (2.504) BS03 GLC ? N/A A0A068PS59 31788942
    4792 6k0v:B (2.504) BS04 GLC ? N/A A0A068PS59 31788942
    4793 6k0v:B (2.504) BS05 GLC ? N/A A0A068PS59 31788942
    4794 6k0v:B (2.504) BS06 GLC ? N/A A0A068PS59 31788942
    4795 6k0v:C (2.504) BS01 GLC ? N/A A0A068PS59 31788942
    4796 6k0v:C (2.504) BS02 GLC ? N/A A0A068PS59 31788942
    4797 6k0v:C (2.504) BS03 GLC ? N/A A0A068PS59 31788942
    4798 6k0v:C (2.504) BS04 GLC ? N/A A0A068PS59 31788942
    4799 6k0v:C (2.504) BS05 GLC ? N/A A0A068PS59 31788942
    4800 6k0v:D (2.504) BS01 GLC ? N/A A0A068PS59 31788942
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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