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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 6165 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0t:P (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    2 1a0t:P (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    3 1a0t:Q (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    4 1a0t:Q (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    5 1a0t:R (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    6 1a0t:R (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    7 1a47:A (2.56) BS01 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    8 1a47:A (2.56) BS02 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    9 1a47:A (2.56) BS04 GLC 2.4.1.19 GO:0003824 ... P26827 9488711
    10 1a7l:A (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 9654443
    11 1a7l:A (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 9654443
    12 1a7l:B (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 9654443
    13 1a7l:B (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 9654443
    14 1a7l:C (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 9654443
    15 1a7l:C (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 9654443
    16 1ac0:A (-1.00) BS01 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    17 1ac0:A (-1.00) BS02 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    18 1ac0:A (-1.00) BS03 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    19 1ac0:A (-1.00) BS04 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    20 1acz:A (-1.00) BS01 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    21 1acz:A (-1.00) BS02 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    22 1acz:A (-1.00) BS03 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    23 1acz:A (-1.00) BS04 GLC 3.2.1.3 GO:0030246 ... P69328 9195884
    24 1af6:A (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    25 1af6:B (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337 PDBbind: -logKd/Ki=1.82, Kd=15mM
    26 1af6:C (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    27 1agm:A (2.3) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    28 1agm:A (2.3) BS06 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    29 1ahp:A (3.0) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    30 1ahp:A (3.0) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    31 1ahp:B (3.0) BS01 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    32 1ahp:B (3.0) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 9145112
    33 1anf:A (1.67) BS01 GLC ? GO:0005515 ... P0AEX9 9309217
    34 1anf:A (1.67) BS02 GLC ? GO:0005515 ... P0AEX9 9309217
    35 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    36 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    37 1b9z:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    38 1b9z:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    39 1b9z:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    40 1b9z:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    41 1b9z:A (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    42 1b9z:A (2.1) BS06 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    43 1b9z:A (2.1) BS07 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    44 1bag:A (2.5) BS02 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    45 1bag:A (2.5) BS03 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    46 1bag:A (2.5) BS04 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    47 1bag:A (2.5) BS05 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    48 1bdg:A (2.6) BS01 GLC 2.7.1.1 GO:0001678 ... Q26609 9665168
    49 1bfn:A (2.07) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 9677422
    50 1bfn:A (2.07) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 9677422
    51 1brr:B (2.9) BS01 GLC ? GO:0005216 ... P02945 9751724
    52 1btc:A (2.0) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 8334116
    53 1btc:A (2.0) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 8334116
    54 1byb:A (1.9) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    55 1byb:A (1.9) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    56 1byb:A (1.9) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    57 1byb:A (1.9) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    58 1byc:A (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    59 1byc:A (2.2) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    60 1byc:A (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    61 1byd:A (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    62 1byd:A (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 8011643
    63 1bzw:B (2.7) BS01 GLC ? GO:0030246 ... P02872 N/A
    64 1bzw:D (2.7) BS01 GLC ? GO:0030246 ... P02872 N/A
    65 1cdg:A (2.0) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 8107143
    66 1cdg:A (2.0) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 8107143
    67 1cdg:A (2.0) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 8107143
    68 1cdg:A (2.0) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 8107143
    69 1cdg:A (2.0) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 8107143
    70 1cel:B (1.8) BS01 GLC 3.2.1.91 GO:0004553 ... P62694 8036495
    71 1cgu:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P30920 1390660
    72 1cgu:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P30920 1390660
    73 1cgv:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    74 1cgv:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    75 1cgv:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    76 1cgv:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    77 1cgv:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    78 1cgv:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    79 1cgw:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    80 1cgw:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    81 1cgw:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    82 1cgw:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    83 1cgw:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    84 1cgw:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    85 1cgx:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    86 1cgx:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    87 1cgx:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    88 1cgx:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    89 1cgx:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    90 1cgx:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    91 1cgy:A (2.5) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    92 1cgy:A (2.5) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    93 1cgy:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    94 1cgy:A (2.5) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    95 1cgy:A (2.5) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    96 1cgy:A (2.5) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7880832
    97 1cpu:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    98 1cpu:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    99 1cpu:A (2.0) BS04 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    100 1cr7:A (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    101 1cr7:B (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    102 1cr7:E (2.6) BS01 GLC ? GO:0030246 ... P02872 11288176
    103 1cxe:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    104 1cxe:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    105 1cxe:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    106 1cxe:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    107 1cxe:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    108 1cxe:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    109 1cxe:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    110 1cxe:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    111 1cxe:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    112 1cxf:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    113 1cxf:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    114 1cxf:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    115 1cxf:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    116 1cxf:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    117 1cxf:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    118 1cxf:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    119 1cxf:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    120 1cxf:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    121 1cxh:A (2.41) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    122 1cxh:A (2.41) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    123 1cxh:A (2.41) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    124 1cxh:A (2.41) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    125 1cxh:A (2.41) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    126 1cxh:A (2.41) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    127 1cxh:A (2.41) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    128 1cxh:A (2.41) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    129 1cxh:A (2.41) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    130 1cxh:A (2.41) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    131 1cxi:A (2.2) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    132 1cxi:A (2.2) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    133 1cxi:A (2.2) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    134 1cxi:A (2.2) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    135 1cxi:A (2.2) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    136 1cxi:A (2.2) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    137 1cxk:A (2.09) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    138 1cxk:A (2.09) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    139 1cxk:A (2.09) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    140 1cxk:A (2.09) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    141 1cxk:A (2.09) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    142 1cxk:A (2.09) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    143 1cxk:A (2.09) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    144 1cxk:A (2.09) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    145 1cxk:A (2.09) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    146 1cxk:A (2.09) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    147 1cxk:A (2.09) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    148 1cxk:A (2.09) BS12 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    149 1cxk:A (2.09) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    150 1cxl:A (1.81) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    151 1cxl:A (1.81) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    152 1cxl:A (1.81) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    153 1cxl:A (1.81) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    154 1cxl:A (1.81) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    155 1cza:N (1.9) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    156 1cza:N (1.9) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    157 1d3c:A (1.78) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    158 1d3c:A (1.78) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    159 1d3c:A (1.78) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    160 1d3c:A (1.78) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    161 1d3c:A (1.78) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    162 1d3c:A (1.78) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    163 1d3c:A (1.78) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    164 1d3c:A (1.78) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    165 1d3c:A (1.78) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    166 1d3c:A (1.78) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    167 1d3c:A (1.78) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 10574960
    168 1ded:A (2.0) BS01 GLC 2.4.1.19 GO:0003824 ... P05618 10731709
    169 1ded:B (2.0) BS01 GLC 2.4.1.19 GO:0003824 ... P05618 10731709
    170 1dgk:N (2.8) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    171 1dgk:N (2.8) BS02 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    172 1dmb:A (1.8) BS01 GLC ? GO:0005515 ... P0AEX9 8399200
    173 1dmb:A (1.8) BS02 GLC ? GO:0005515 ... P0AEX9 8399200
    174 1do1:A (1.5) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    175 1do3:A (1.55) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    176 1do4:A (1.7) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    177 1do7:A (1.85) BS01 GLC 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    178 1dtu:A (2.4) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    179 1dtu:A (2.4) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    180 1dtu:A (2.4) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    181 1dtu:A (2.4) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    182 1dtu:A (2.4) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    183 1dtu:A (2.4) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    184 1dtu:A (2.4) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    185 1dtu:A (2.4) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10686101
    186 1dze:A (2.5) BS01 GLC ? GO:0005216 ... P02945 15328615
    187 1e1y:A (2.23) BS03 GLC 2.4.1.1 GO:0000166 ... P00489 10924512
    188 1e3z:A (1.93) BS01 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    189 1e3z:A (1.93) BS03 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    190 1e3z:A (1.93) BS04 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    191 1e40:A (2.2) BS01 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    192 1e40:A (2.2) BS02 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    193 1e40:A (2.2) BS03 GLC 3.2.1.1 GO:0004553 ... P00692 10924103
    194 1e4o:A (2.9) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    195 1e4o:A (2.9) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    196 1e4o:A (2.9) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    197 1e4o:A (2.9) BS05 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    198 1e4o:B (2.9) BS02 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    199 1e4o:B (2.9) BS03 GLC 2.4.1.1 GO:0004645 ... P00490 10469642
    200 1e4o:B (2.9) BS04 GLC 2.4.1.1 GO:0004645 ... P00490 10469642

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218