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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4cu7:A (2.2) BS01 GIF 3.2.1.23 GO:0004553 ... A0A0H2UP19 25210925 MOAD: Kd=26nM
    PDBbind: -logKd/Ki=7.59, Kd=26nM
    2 4ufh:A (2.16) BS01 GIF 3.2.1.46 GO:0004336 ... P54818 26029356 MOAD: Ki=380nM
    PDBbind: -logKd/Ki=6.42, Ki=380nM
    3 5t99:A (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC8 29535379
    4 5t99:B (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC8 29535379
    5 5t9g:A (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC9 29535379
    6 5t9g:B (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC9 29535379
    7 5t9g:C (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC9 29535379
    8 5t9g:D (2.4) BS01 GIF ? GO:0004553 ... A0A2D0TCC9 29535379
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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