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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n1h:A (2.8) BS07 GH3 2.7.7.48 GO:0000166 ... P0CK31 12464184
    2 2pi4:A (2.5) BS03 GH3 2.7.7.6 GO:0000428 ... P00573 17512007
    3 3avt:A (2.607) BS02 GH3 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22245970
    4 3avt:A (2.607) BS05 GH3 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22245970
    5 3avw:A (2.602) BS05 GH3 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22245970
    6 3avx:A (2.406) BS03 GH3 ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22245970
    7 4k99:A (1.95) BS06 GH3 2.7.7.86 N/A Q8C6L5 23647843
    8 4xj5:A (1.552) BS03 GH3 2.7.7.- GO:0140701 ... Q9KVG7 25865248
    9 4xj5:A (1.552) BS04 GH3 2.7.7.- GO:0140701 ... Q9KVG7 25865248
    10 4xj6:A (2.31) BS03 GH3 2.7.7.- GO:0005524 ... Q6XGD8 25865248
    11 4xj6:A (2.31) BS04 GH3 2.7.7.- GO:0005524 ... Q6XGD8 25865248
    12 6zxb:A (2.2) BS01 GH3 ? GO:0000160 ... B0SUI1 33846343
    13 6zxb:B (2.2) BS01 GH3 ? GO:0000160 ... B0SUI1 33846343
    14 6zxb:B (2.2) BS02 GH3 ? GO:0000160 ... B0SUI1 33846343
    15 6zxc:A (2.8) BS02 GH3 ? GO:0000160 ... B0SUI1 33846343
    16 6zxc:B (2.8) BS02 GH3 ? GO:0000160 ... B0SUI1 33846343
    17 6zxc:C (2.8) BS02 GH3 ? GO:0000160 ... B0SUI1 33846343
    18 6zxc:D (2.8) BS02 GH3 ? GO:0000160 ... B0SUI1 33846343
    19 7p1g:K (3.2) BS02 GH3 ? GO:0005515 ... P0AEX9
    Q9I1S4    		 34785651
    20 7p1g:L (3.2) BS02 GH3 ? GO:0005515 ... P0AEX9
    Q9I1S4    		 34785651
    21 7p1g:M (3.2) BS02 GH3 ? GO:0005515 ... P0AEX9
    Q9I1S4    		 34785651
    22 7p1g:N (3.2) BS02 GH3 ? GO:0005515 ... P0AEX9
    Q9I1S4    		 34785651
    23 7p1g:O (3.2) BS02 GH3 ? GO:0005515 ... P0AEX9
    Q9I1S4    		 34785651
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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