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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1njj:A (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    PDBbind: -logKd/Ki=2.10, Ki=8mM
    2 1njj:B (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    3 1njj:C (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    4 5c4k:A (3.05) BS01 GET ? GO:0000166 ... O68183 26802312 PDBbind: -logKd/Ki=4.56, Kd=27.5uM
    5 5ndg:n4 (3.7) BS03 GET ? GO:0002181 ... P04449 29208708
    6 5ndg:n6 (3.7) BS04 GET ? GO:0002181 ... P05743 29208708
    7 5u18:A (2.195) BS02 GET ? GO:0003677 ... Q2MG72 28876898
    8 9au3:A (1.35) BS02 GET N/A N/A Q70KE6 39207862
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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