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BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 8un5:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6402 8un5:B (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6403 8uqn:A (3.4) BS01 GDP ? GO:0001508 ... P50148 37991948
    6404 8uqo:A (3.37) BS01 GDP ? GO:0001508 ... P50148 37991948
    6405 8utn:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6406 8utn:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6407 8uto:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6408 8uto:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6409 8utp:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6410 8utp:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6411 8utq:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6412 8utq:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6413 8utr:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6414 8uts:B (2.7) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6415 8utt:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6416 8utt:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6417 8utu:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6418 8utv:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6419 8utw:B (3.4) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6420 8uty:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6421 8uty:I (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    6422 8v4s:A (2.49) BS01 GDP N/A N/A Q64663 39107314
    6423 8v4s:B (2.49) BS01 GDP N/A N/A Q64663 39107314
    6424 8v4s:C (2.49) BS01 GDP N/A N/A Q64663 39107314
    6425 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    6426 8v87:b (2.66) BS02 GDP ? GO:0000054 ... Q02892 38632236
    6427 8v9l:x (3.0) BS02 GDP ? GO:0003746 ... A0QS98 38355796
    6428 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    6429 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    6430 8vof:B (3.0) BS01 GDP N/A N/A P62491 N/A
    6431 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    6432 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    6433 8wb1:A (1.72) BS01 GDP N/A N/A H2Q5M0 N/A
    6434 8wd0:B (2.6) BS02 GDP N/A GO:0005525 ... A0A287AGU7 38905886
    6435 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6436 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6437 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6438 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6439 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6440 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    6441 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    6442 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    6443 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    6444 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    6445 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    6446 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    6447 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    6448 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    6449 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    6450 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    6451 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    6452 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    6453 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    6454 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    6455 8zq3:A (2.43) BS01 GDP N/A GO:0000045 ... P51149 38897042
    6456 9bht:A (3.26) BS01 GDP N/A N/A N/A 38960133
    6457 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    6458 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    6459 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    6460 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    6461 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    6462 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    6463 9bht:F (3.26) BS01 GDP N/A N/A N/A 38960133
    6464 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    6465 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    6466 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    6467 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    6468 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    6469 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    6470 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    6471 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    6472 9c1a:A (1.96) BS01 GDP N/A N/A O14807 39196705
    6473 9c1b:A (2.27) BS01 GDP N/A N/A O14807 39196705
    6474 9c1b:B (2.27) BS01 GDP N/A N/A O14807 39196705
    6475 9c1b:C (2.27) BS01 GDP N/A N/A O14807 39196705
    6476 9c1b:D (2.27) BS01 GDP N/A N/A O14807 39196705
    6477 9d8a:A (1.65) BS01 GDP N/A N/A A0A367K070 N/A
    6478 9f17:A (1.7) BS02 GDP N/A N/A P56137 39062851
    6479 9f17:B (1.7) BS03 GDP N/A N/A P56137 39062851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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