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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 8snb:EH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6202 8snb:EJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6203 8snb:EL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6204 8snb:EM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6205 8snb:FC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6206 8snb:FD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6207 8snb:FF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6208 8snb:FH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6209 8snb:FJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6210 8snb:FL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6211 8snb:FM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6212 8snb:GC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6213 8snb:GD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6214 8snb:GF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6215 8snb:GH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6216 8snb:GJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6217 8snb:GL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6218 8snb:GM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6219 8snb:HC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6220 8snb:HD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6221 8snb:HF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6222 8snb:HH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6223 8snb:HJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6224 8snb:HL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6225 8snb:HM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6226 8snb:IC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6227 8snb:ID (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6228 8snb:IF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6229 8snb:IH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6230 8snb:IJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6231 8snb:IL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6232 8snb:JC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6233 8snb:JD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6234 8snb:JF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6235 8snb:JH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6236 8snb:JJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6237 8snb:JL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6238 8snb:JM (3.3) BS03 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6239 8snb:KC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6240 8snb:KD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6241 8snb:KF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6242 8snb:KH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6243 8snb:KJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6244 8snb:KL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6245 8snb:KM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6246 8snb:LC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6247 8snb:LD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6248 8snb:LF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6249 8snb:LH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6250 8snb:LJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6251 8snb:LL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6252 8snb:LM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6253 8snb:MC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6254 8snb:MD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6255 8snb:MF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6256 8snb:MH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6257 8snb:MJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6258 8snb:MM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6259 8snb:NC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6260 8snb:ND (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6261 8snb:NF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6262 8snb:NH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6263 8snb:NJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6264 8snb:NK (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6265 8snb:NM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6266 8snb:OC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6267 8snb:OD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6268 8snb:OF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6269 8snb:OH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6270 8snb:OJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6271 8snb:OM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6272 8snb:PC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6273 8snb:PD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6274 8snb:PF (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6275 8snb:PH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6276 8snb:PJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6277 8snb:PM (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6278 8snb:QC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6279 8snb:QD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6280 8snb:QF (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6281 8snb:QH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6282 8snb:QJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6283 8snb:QM (3.3) BS03 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6284 8snb:RC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6285 8snb:RD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6286 8snb:RF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6287 8snb:RH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6288 8snb:RJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6289 8snb:RM (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6290 8snb:SC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6291 8snb:SD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6292 8snb:SF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6293 8snb:SH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6294 8snb:SJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6295 8snb:SL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6296 8snb:SM (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6297 8snb:TC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6298 8snb:TD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6299 8snb:TF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6300 8snb:TH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6301 8snb:TJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6302 8snb:TL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6303 8snb:TM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6304 8snb:UC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6305 8snb:UD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6306 8snb:UF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6307 8snb:UH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6308 8snb:UJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6309 8snb:UL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6310 8snb:UM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6311 8snb:VC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6312 8snb:VD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6313 8snb:VF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6314 8snb:VH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6315 8snb:VJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6316 8snb:VL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6317 8snb:VM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6318 8snb:WC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6319 8snb:WD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6320 8snb:WF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6321 8snb:WH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6322 8snb:WJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6323 8snb:WL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6324 8ssl:A (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    6325 8ssl:B (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    6326 8ssl:C (4.6) BS01 GDP 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 37517695
    6327 8stm:A (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6328 8stm:B (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6329 8stm:C (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6330 8stm:D (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6331 8stn:A (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6332 8stn:B (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    6333 8sxz:b (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6334 8sxz:c (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6335 8sxz:f (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6336 8sxz:g (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6337 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6338 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6339 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6340 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    6341 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    6342 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6343 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6344 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6345 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6346 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6347 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6348 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6349 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    6350 8t1c:E (3.49) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 37353478
    6351 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    6352 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    6353 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    6354 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    6355 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    6356 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    6357 8tlr:A (1.70004) BS01 GDP N/A N/A P01112 39255801
    6358 8tr5:A (2.53) BS01 GDP N/A N/A Q64663 39107314
    6359 8tr5:B (2.53) BS01 GDP N/A N/A Q64663 39107314
    6360 8tr5:C (2.53) BS01 GDP N/A N/A Q64663 39107314
    6361 8tr9:A (3.2) BS01 GDP N/A GO:0000785 ... P21980 N/A
    6362 8trj:A (2.78) BS02 GDP N/A N/A Q64663 39107314
    6363 8trj:B (2.78) BS02 GDP N/A N/A Q64663 39107314
    6364 8trj:C (2.78) BS03 GDP N/A N/A Q64663 39107314
    6365 8tvk:A (1.04) BS01 GDP N/A N/A P01116 N/A
    6366 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    6367 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    6368 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    6369 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    6370 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    6371 8txj:A (1.4) BS01 GDP N/A N/A P01116 N/A
    6372 8txk:A (1.38) BS01 GDP N/A N/A P01116 N/A
    6373 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    6374 8ty2:A (1.41) BS01 GDP N/A N/A P01116 N/A
    6375 8ty8:A (1.4) BS01 GDP N/A N/A P01116 N/A
    6376 8ty9:A (1.43) BS01 GDP N/A N/A P01116 N/A
    6377 8tym:B (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6378 8tym:C (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6379 8tym:c (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6380 8tym:f (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6381 8tyn:C (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6382 8tyn:F (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6383 8tyn:c (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6384 8tyn:f (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    6385 8tzc:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    6386 8tzf:A (3.4) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    6387 8tzg:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    6388 8tzh:A (3.9) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    6389 8u7h:C (3.8) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38263358
    6390 8u7l:A (3.6) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6391 8u7l:B (3.6) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6392 8u8a:B (3.4) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6393 8u8a:C (3.4) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6394 8u8b:A (3.7) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6395 8u8b:B (3.7) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    6396 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6397 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6398 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6399 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    6400 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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