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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 8riv:B (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    6002 8riv:D (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    6003 8riw:B (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    6004 8riw:D (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    6005 8s8c:A (1.9) BS01 GDP N/A N/A P01116 38924388
    6006 8sf7:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6007 8sf7:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6008 8sf7:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6009 8sf7:AH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6010 8sf7:AJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6011 8sf7:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6012 8sf7:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6013 8sf7:BB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6014 8sf7:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6015 8sf7:BF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6016 8sf7:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6017 8sf7:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6018 8sf7:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6019 8sf7:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6020 8sf7:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6021 8sf7:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6022 8sf7:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6023 8sf7:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6024 8sf7:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6025 8sf7:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6026 8sf7:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6027 8sf7:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6028 8sf7:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6029 8sf7:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6030 8sf7:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6031 8sf7:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6032 8sf7:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6033 8sf7:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6034 8sf7:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6035 8sf7:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6036 8sf7:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6037 8sf7:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6038 8sf7:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6039 8sf7:EL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6040 8sf7:EN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6041 8sf7:FB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6042 8sf7:FD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6043 8sf7:FF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6044 8sf7:FH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6045 8sf7:FJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6046 8sf7:FL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6047 8sf7:FN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6048 8sf7:GB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6049 8sf7:GD (4.1) BS03 GDP ? GO:0000226 ... P41352 38598282
    6050 8sf7:GF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6051 8sf7:GH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6052 8sf7:GJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6053 8sf7:GL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6054 8sf7:GN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6055 8sf7:HB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6056 8sf7:HD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6057 8sf7:HF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6058 8sf7:HH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6059 8sf7:HJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6060 8sf7:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6061 8sf7:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6062 8sf7:IB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6063 8sf7:ID (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6064 8sf7:IF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6065 8sf7:IH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6066 8sf7:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6067 8sf7:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6068 8sf7:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6069 8sf7:JB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6070 8sf7:JD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6071 8sf7:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6072 8sf7:JH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6073 8sf7:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6074 8sf7:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6075 8sf7:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6076 8sf7:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6077 8sf7:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6078 8sf7:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6079 8sf7:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6080 8sf7:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6081 8sf7:KL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6082 8sf7:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6083 8sf7:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6084 8sf7:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6085 8sf7:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6086 8sf7:LH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6087 8sf7:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6088 8sf7:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6089 8sf7:LN (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6090 8sf7:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6091 8sf7:MD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6092 8sf7:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6093 8sf7:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6094 8sf7:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6095 8sf7:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6096 8sf7:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6097 8sf7:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6098 8sf7:ND (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6099 8sf7:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6100 8sf7:NH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6101 8sf7:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6102 8sf7:NL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6103 8sf7:NN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6104 8sf7:OB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6105 8sf7:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6106 8sf7:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6107 8sf7:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6108 8sf7:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6109 8sf7:OL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6110 8sf7:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6111 8sf7:PA (4.1) BS02 GDP 3.6.5.- GO:0000226 ... P41351 38598282
    6112 8sf7:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6113 8sf7:PD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6114 8sf7:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6115 8sf7:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6116 8sf7:PJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6117 8sf7:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6118 8sf7:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6119 8sf7:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6120 8sf7:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6121 8sf7:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6122 8sf7:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6123 8sf7:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6124 8sf7:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6125 8sf7:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6126 8sf7:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6127 8sf7:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6128 8sf7:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6129 8sf7:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6130 8sf7:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6131 8sf7:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6132 8sf7:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6133 8sf7:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6134 8sf7:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6135 8sf7:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6136 8sf7:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6137 8sf7:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6138 8sf7:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6139 8sf7:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6140 8sf7:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6141 8sf7:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6142 8sf7:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6143 8sf7:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6144 8sf7:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6145 8sf7:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6146 8sf7:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6147 8sf7:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6148 8sf7:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6149 8sf7:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6150 8sf7:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6151 8sf7:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6152 8sf7:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6153 8sf7:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6154 8sf7:VB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6155 8sf7:VD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    6156 8sf7:VF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6157 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6158 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6159 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6160 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6161 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6162 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6163 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6164 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6165 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6166 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6167 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    6168 8sgd:A (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    6169 8sgd:B (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    6170 8sgd:C (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    6171 8sgd:D (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    6172 8sh7:B (2.8) BS01 GDP ? GO:0000226 ... P68371 N/A
    6173 8smc:C (4.02) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38127736
    6174 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6175 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6176 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6177 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6178 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6179 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6180 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6181 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6182 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6183 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6184 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6185 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6186 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6187 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6188 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6189 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6190 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6191 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6192 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6193 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6194 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6195 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6196 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6197 8snb:DL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6198 8snb:EB (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6199 8snb:ED (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    6200 8snb:EF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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