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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 8otz:BD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5802 8otz:BF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5803 8otz:BH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5804 8otz:BJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5805 8otz:BL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5806 8otz:CB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5807 8otz:CD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5808 8otz:CF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5809 8otz:CH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5810 8otz:CJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5811 8otz:CL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5812 8otz:DB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5813 8otz:DD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5814 8otz:DF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5815 8otz:DH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5816 8otz:DJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5817 8otz:DL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5818 8otz:DN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5819 8otz:EB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5820 8otz:ED (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5821 8otz:EF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5822 8otz:EH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5823 8otz:EJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5824 8otz:EL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5825 8otz:EN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5826 8otz:FB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5827 8otz:FD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5828 8otz:FF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5829 8otz:FH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5830 8otz:FJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5831 8otz:FL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5832 8otz:FN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5833 8otz:GB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5834 8otz:GD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5835 8otz:GF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5836 8otz:GH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5837 8otz:GJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5838 8otz:GL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5839 8otz:GN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5840 8otz:HB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5841 8otz:HD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5842 8otz:HF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5843 8otz:HH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5844 8otz:HJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5845 8otz:HL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5846 8otz:HN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5847 8otz:IB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5848 8otz:ID (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5849 8otz:IF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5850 8otz:IH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5851 8otz:IJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5852 8otz:IL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5853 8otz:IN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5854 8otz:JB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5855 8otz:JD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5856 8otz:JF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5857 8otz:JH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5858 8otz:JJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5859 8otz:JL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5860 8otz:JN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5861 8otz:KB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5862 8otz:KD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5863 8otz:KF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5864 8otz:KH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5865 8otz:KJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5866 8otz:KL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5867 8otz:KN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5868 8otz:LB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5869 8otz:LD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5870 8otz:LF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5871 8otz:LH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5872 8otz:LJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5873 8otz:LL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5874 8otz:LN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5875 8otz:MB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5876 8otz:MD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5877 8otz:MF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5878 8otz:MH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5879 8otz:MJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5880 8otz:ML (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5881 8otz:MN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5882 8otz:N0 (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5883 8otz:NB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5884 8otz:ND (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5885 8otz:NF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5886 8otz:NH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5887 8otz:NJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5888 8otz:NL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5889 8otz:O0 (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5890 8otz:OB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5891 8otz:OD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5892 8otz:OF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5893 8otz:OH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5894 8otz:OJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5895 8otz:OL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5896 8otz:PB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5897 8otz:PD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5898 8otz:PF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5899 8otz:PH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5900 8otz:PJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5901 8otz:PL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5902 8otz:QB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5903 8otz:QD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5904 8otz:QF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5905 8otz:QH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5906 8otz:QJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5907 8otz:QL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5908 8otz:RB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5909 8otz:RD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5910 8otz:RF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5911 8otz:RH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5912 8otz:RJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5913 8otz:RL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5914 8otz:SB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5915 8otz:SD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5916 8otz:SF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5917 8otz:SH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5918 8otz:SJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5919 8otz:SL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5920 8otz:TB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5921 8otz:TD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5922 8otz:TF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5923 8otz:TH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5924 8otz:TJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5925 8otz:TL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5926 8otz:UB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5927 8otz:UD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5928 8otz:UF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5929 8otz:UH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5930 8otz:UJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5931 8otz:UL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5932 8otz:UN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5933 8otz:VB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5934 8otz:VD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5935 8otz:VF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5936 8otz:VH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5937 8otz:VJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5938 8otz:VL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5939 8otz:VN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5940 8otz:WB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5941 8otz:WD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5942 8otz:WF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5943 8otz:WH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5944 8otz:WJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5945 8otz:WL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5946 8otz:WN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5947 8ou0:B (3.5) BS02 GDP ? GO:0000226 ... Q3MHM5 37327785
    5948 8oul:A (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    5949 8oul:B (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    5950 8oul:C (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    5951 8oun:A (1.653) BS01 GDP ? GO:0003924 ... A0A8J7ZFD1 N/A
    5952 8oun:B (1.653) BS01 GDP ? GO:0003924 ... A0A8J7ZFD1 N/A
    5953 8oy1:A (3.34) BS01 GDP ? GO:0000139 ... P08754 N/A
    5954 8p2f:E (2.44) BS05 GDP ? GO:0003746 ... Q2G0N1 38902339
    5955 8p2g:E (2.02) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    5956 8p2h:E (2.49) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    5957 8pfh:A (3.24) BS01 GDP ? GO:0000144 ... P25342 38184752
    5958 8pfh:A (3.24) BS02 GDP ? GO:0000144 ... P25342 38184752
    5959 8pfh:B (3.24) BS01 GDP ? GO:0005525 ... P32457 38184752
    5960 8pfh:B (3.24) BS02 GDP ? GO:0005525 ... P32457 38184752
    5961 8pfh:C (3.24) BS01 GDP ? GO:0005525 ... P32468 38184752
    5962 8pfh:C (3.24) BS02 GDP ? GO:0005525 ... P32468 38184752
    5963 8pfh:D (3.24) BS01 GDP ? GO:0005525 ... Q07657 38184752
    5964 8pfh:D (3.24) BS02 GDP ? GO:0005525 ... Q07657 38184752
    5965 8q87:A (2.4) BS03 GDP N/A N/A Q90705 N/A
    5966 8qau:D (3.54) BS01 GDP ? GO:0000226 ... P02554 N/A
    5967 8qrl:X (3.34) BS03 GDP N/A GO:0003723 ... P51398 38969660
    5968 8qu8:F (3.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5969 8qug:A (1.56) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5970 8qv2:a (9.2) BS02 GDP ? GO:0000930 ... N/A 38609662
    5971 8qvu:A (2.24) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    5972 8qvu:E (2.24) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    5973 8qw0:A (2.175) BS01 GDP N/A N/A Q13232 N/A
    5974 8qw0:B (2.175) BS01 GDP N/A N/A Q13232 N/A
    5975 8qw0:C (2.175) BS01 GDP N/A N/A Q13232 N/A
    5976 8qw0:D (2.175) BS01 GDP N/A N/A Q13232 N/A
    5977 8qw0:E (2.175) BS01 GDP N/A N/A Q13232 N/A
    5978 8qw0:F (2.175) BS01 GDP N/A N/A Q13232 N/A
    5979 8qw0:G (2.175) BS01 GDP N/A N/A Q13232 N/A
    5980 8qw0:H (2.175) BS01 GDP N/A N/A Q13232 N/A
    5981 8qw0:I (2.175) BS01 GDP N/A N/A Q13232 N/A
    5982 8qw0:J (2.175) BS01 GDP N/A N/A Q13232 N/A
    5983 8qw0:K (2.175) BS01 GDP N/A N/A Q13232 N/A
    5984 8qw0:L (2.175) BS01 GDP N/A N/A Q13232 N/A
    5985 8qw6:A (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5986 8qw6:E (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5987 8qw7:A (2.36) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5988 8qw7:E (2.36) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    5989 8r1a:A (26.8) BS02 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5990 8r1a:B (26.8) BS03 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5991 8r1a:C (26.8) BS02 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5992 8r1a:D (26.8) BS03 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5993 8r1a:E (26.8) BS02 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5994 8r1a:F (26.8) BS03 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    5995 8r67:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    5996 8r67:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    5997 8r9r:A (2.42) BS01 GDP ? GO:0003924 ... A4Y8J9 38376823
    5998 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    5999 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    6000 8rdw:H (2.74) BS02 GDP ? GO:0003746 ... A0A0M4U5B4 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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