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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 8j07:IV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5602 8j07:IX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5603 8j07:JB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5604 8j07:JD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5605 8j07:JF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5606 8j07:JH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5607 8j07:JJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5608 8j07:JL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5609 8j07:JN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5610 8j07:JP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5611 8j07:JR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5612 8j07:JT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5613 8j07:JV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5614 8j07:JX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5615 8j07:JZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5616 8j07:KB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5617 8j07:KD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5618 8j07:KF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5619 8j07:KH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5620 8j07:KJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5621 8j07:KL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5622 8j07:KN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5623 8j07:KP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5624 8j07:KR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5625 8j07:KT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5626 8j07:KV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5627 8j07:KX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5628 8j07:KZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5629 8j07:LB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5630 8j07:LD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5631 8j07:LF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5632 8j07:LH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5633 8j07:LJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5634 8j07:LL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5635 8j07:LN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5636 8j07:LP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5637 8j07:LR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5638 8j07:LT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5639 8j07:LV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5640 8j07:LX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5641 8j07:LZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5642 8j07:MD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5643 8j07:MF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5644 8j07:MH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5645 8j07:MJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5646 8j07:ML (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5647 8j07:MN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5648 8j07:MP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5649 8j07:MR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5650 8j07:MT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5651 8j07:MV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5652 8j07:MX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5653 8j07:MZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5654 8j07:NB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5655 8j07:ND (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5656 8j07:NF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5657 8j07:NH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5658 8j07:NJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5659 8j07:NL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5660 8j07:NN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5661 8j07:NP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5662 8j07:NR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5663 8j07:NT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5664 8j07:NV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5665 8j07:NX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5666 8j07:NZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5667 8j07:OB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5668 8j07:OD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5669 8j07:OF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5670 8j07:OH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5671 8j07:OJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5672 8j07:OL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5673 8j07:ON (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5674 8j07:OP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5675 8j07:OR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5676 8j07:OT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5677 8j07:OV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5678 8j07:OX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5679 8j07:PB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5680 8j07:PD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5681 8j07:PF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5682 8j07:PH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5683 8j07:PJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5684 8j07:PL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5685 8j07:PN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5686 8j07:PP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5687 8j07:PR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5688 8j07:PT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5689 8j07:PV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5690 8j07:PX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5691 8j07:QB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5692 8j07:QD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5693 8j07:QF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5694 8j07:QH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5695 8j07:QJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5696 8j07:QL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5697 8j07:QN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5698 8j07:QP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5699 8j07:QR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5700 8j07:QT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5701 8j07:QV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5702 8j07:QX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5703 8j07:RB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5704 8j07:RD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5705 8j07:RF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5706 8j07:RH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5707 8j07:RJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5708 8j07:RL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5709 8j07:RN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5710 8j07:RP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5711 8j07:RR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5712 8j07:RT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5713 8j07:RV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5714 8j07:RX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5715 8j07:SB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5716 8j07:SD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5717 8j07:SF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5718 8j07:SH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5719 8j07:SJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5720 8j07:SL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5721 8j07:SN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5722 8j07:SP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5723 8j07:SR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5724 8j07:ST (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5725 8j07:SV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5726 8j07:SX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5727 8j07:TB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5728 8j07:TD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5729 8j07:TF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5730 8j07:TH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5731 8j07:TJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5732 8j07:TL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5733 8j07:TN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5734 8j07:TP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5735 8j07:TR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5736 8j07:TT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5737 8j07:TV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5738 8j07:TX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5739 8j07:TZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5740 8j07:UB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5741 8j07:UD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5742 8j07:UF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5743 8j07:UH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5744 8j07:UJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5745 8j07:UL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5746 8j07:UN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5747 8j07:UP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5748 8j07:UR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5749 8j07:UT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5750 8j07:UV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5751 8j07:UX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5752 8j07:UZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5753 8j07:VB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5754 8j07:VD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5755 8j07:VF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5756 8j07:VH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5757 8j07:VJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5758 8j07:VL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5759 8j07:VN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5760 8j07:VP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5761 8j07:VR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5762 8j07:VT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5763 8j07:VV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5764 8j07:VX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5765 8j07:VZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5766 8j07:WB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5767 8j07:WD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5768 8j07:WF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5769 8j07:WH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5770 8j07:WJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5771 8j07:WL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5772 8j07:WN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5773 8j07:WP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5774 8j07:WR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5775 8j07:WT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5776 8j07:WV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5777 8j07:WX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    5778 8jgd:A (1.60037) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    5779 8jhl:A (2.10004) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    5780 8jjb:B (2.68) BS02 GDP ? GO:0000226 ... P02554 38430854
    5781 8jjc:B (2.76) BS02 GDP ? GO:0000226 ... P02554 38430854
    5782 8jjs:A (1.534) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37463267
    5783 8jk9:A (1.6) BS03 GDP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    5784 8jpb:Q (3.07) BS01 GDP ? GO:0001508 ... P50148 37532940
    5785 8jpc:Q (3.07) BS01 GDP ? GO:0001508 ... P50148 37532940
    5786 8jpe:Q (2.91) BS01 GDP ? GO:0001508 ... P50148 37532940
    5787 8k2a:Se (2.9) BS02 GDP N/A GO:0003723 ... P51398 38942792
    5788 8k2d:CD (3.2) BS03 GDP N/A GO:0003746 ... P32324 38942792
    5789 8oin:AX (3.6) BS03 GDP ? GO:0005654 ... A0A8D1XNL0 37141370
    5790 8oip:AX (3.6) BS03 GDP ? GO:0005654 ... A0A8D1XNL0 37141370
    5791 8oir:AX (3.1) BS03 GDP ? GO:0003723 ... P51398 37141370
    5792 8ois:AX (3.0) BS03 GDP ? GO:0003723 ... P51398 37141370
    5793 8onv:A (1.01) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    5794 8otz:AB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5795 8otz:AD (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5796 8otz:AF (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5797 8otz:AH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5798 8otz:AJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5799 8otz:AL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    5800 8otz:BB (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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