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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 8glv:M8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5202 8glv:MG (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5203 8glv:MI (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5204 8glv:MT (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5205 8glv:MV (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5206 8glv:Mg (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5207 8glv:Mi (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5208 8glv:Mt (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5209 8glv:Mv (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5210 8glv:N0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5211 8glv:N2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5212 8glv:N6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5213 8glv:N8 (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5214 8glv:NF (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5215 8glv:NH (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5216 8glv:NJ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5217 8glv:NS (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5218 8glv:NU (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5219 8glv:NW (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5220 8glv:Nf (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5221 8glv:Nh (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5222 8glv:Nj (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5223 8glv:O0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5224 8glv:O2 (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5225 8glv:O4 (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5226 8glv:O6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5227 8glv:O8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5228 8glv:P4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5229 8glv:P6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5230 8glv:P8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5231 8glv:Q0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5232 8glv:Q2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5233 8glv:Q4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5234 8glv:Q6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5235 8glv:Q8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5236 8glv:R0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5237 8glv:R2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5238 8glv:R4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5239 8glv:R6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5240 8glv:R8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5241 8glv:S0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5242 8glv:S2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5243 8glv:S4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5244 8glv:S6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5245 8glv:S8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5246 8glv:T0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5247 8glv:T2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5248 8glv:T4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5249 8glv:T6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5250 8glv:T8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5251 8glv:U2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5252 8glv:U4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5253 8glv:U6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5254 8glv:U8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5255 8glv:V0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5256 8glv:V2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5257 8glv:V4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5258 8glv:V6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5259 8glv:V8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5260 8glv:W0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5261 8glv:W2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5262 8glv:W4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5263 8glv:W6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5264 8glv:W8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5265 8glv:X0 (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5266 8glv:X2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5267 8glv:X4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5268 8glv:X6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5269 8glv:X8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5270 8glv:Y0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5271 8glv:Y2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5272 8glv:Y4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5273 8glv:Y6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5274 8glv:Y8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5275 8glv:Z0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5276 8glv:Z2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5277 8glv:Z4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5278 8glv:Z6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5279 8glv:Z8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5280 8grw:A (2.40005) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    5281 8grw:A (2.40005) BS02 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    5282 8grw:B (2.40005) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    5283 8grw:B (2.40005) BS02 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    5284 8gzp:A (3.6) BS04 GDP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 37478848
    5285 8gzq:A (3.9) BS04 GDP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 37478848
    5286 8gzv:A (2.2) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 37429870
    5287 8gzw:A (2.5) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 37429870
    5288 8gzw:C (2.5) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 37429870
    5289 8gzw:E (2.5) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 37429870
    5290 8gzx:A (1.84) BS01 GDP ? GO:0003924 ... P0A9A6 37429870
    5291 8gzy:A (2.6) BS01 GDP ? GO:0003924 ... P0A9A6 37429870
    5292 8gzy:C (2.6) BS01 GDP ? GO:0003924 ... P0A9A6 37429870
    5293 8gzy:E (2.6) BS01 GDP ? GO:0003924 ... P0A9A6 37429870
    5294 8h1o:A (2.67) BS01 GDP ? GO:0000917 ... W9BCK7 37429870
    5295 8htb:A (1.3) BS01 GDP ? GO:0003924 ... Q6GHP9 36854145
    5296 8huh:B (2.8) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    5297 8huh:D (2.8) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    5298 8idt:A (2.8) BS02 GDP ? GO:0003723 ... Q13823 37491604
    5299 8idy:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    5300 8ila:A (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    5301 8ila:B (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    5302 8ila:C (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    5303 8ila:D (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    5304 8ine:A (3.2) BS02 GDP ? GO:0003723 ... Q13823 37491604
    5305 8inf:A (3.0) BS02 GDP ? GO:0003723 ... Q13823 37491604
    5306 8ixq:B (2.1) BS02 GDP ? GO:0016757 ... A9Y8T1 N/A
    5307 8ixq:D (2.1) BS01 GDP ? GO:0016757 ... A9Y8T1 N/A
    5308 8iye:A (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    5309 8iye:B (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    5310 8iyf:A (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    5311 8iyf:B (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    5312 8iyj:AB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5313 8iyj:AD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5314 8iyj:AF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5315 8iyj:AH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5316 8iyj:AJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5317 8iyj:AL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5318 8iyj:AN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5319 8iyj:AP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5320 8iyj:BB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5321 8iyj:BD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5322 8iyj:BF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5323 8iyj:BH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5324 8iyj:BJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5325 8iyj:BL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5326 8iyj:BN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5327 8iyj:BP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5328 8iyj:CB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5329 8iyj:CD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5330 8iyj:CF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5331 8iyj:CH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5332 8iyj:CJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5333 8iyj:CL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5334 8iyj:CN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5335 8iyj:CP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5336 8iyj:DB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5337 8iyj:DD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5338 8iyj:DF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5339 8iyj:DH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5340 8iyj:DJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5341 8iyj:DL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5342 8iyj:DN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5343 8iyj:DP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5344 8iyj:EB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5345 8iyj:ED (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5346 8iyj:EF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5347 8iyj:EH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5348 8iyj:EJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5349 8iyj:EL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5350 8iyj:EN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5351 8iyj:FB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5352 8iyj:FD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5353 8iyj:FF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5354 8iyj:FH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5355 8iyj:FJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5356 8iyj:FL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5357 8iyj:FN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5358 8iyj:GB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5359 8iyj:GD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5360 8iyj:GF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5361 8iyj:GH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5362 8iyj:GJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5363 8iyj:GL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5364 8iyj:GN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5365 8iyj:HB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5366 8iyj:HD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5367 8iyj:HF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5368 8iyj:HH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5369 8iyj:HJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5370 8iyj:HL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5371 8iyj:HN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5372 8iyj:HP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5373 8iyj:IB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5374 8iyj:ID (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5375 8iyj:IF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5376 8iyj:IH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5377 8iyj:IJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5378 8iyj:IL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5379 8iyj:IN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5380 8iyj:IP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5381 8iyj:JB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5382 8iyj:JD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5383 8iyj:JF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5384 8iyj:JH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5385 8iyj:JJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5386 8iyj:JL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5387 8iyj:JN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5388 8iyj:JP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5389 8iyj:KB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5390 8iyj:KD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5391 8iyj:KF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5392 8iyj:KH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5393 8iyj:KJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5394 8iyj:KL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5395 8iyj:KN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5396 8iyj:KP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5397 8iyj:LB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5398 8iyj:LD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5399 8iyj:LF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    5400 8iyj:LH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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