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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 8glv:Au (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5002 8glv:Aw (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5003 8glv:Ay (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5004 8glv:B1 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5005 8glv:B3 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5006 8glv:B5 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5007 8glv:B6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5008 8glv:B8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5009 8glv:BB (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5010 8glv:BG (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5011 8glv:BI (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5012 8glv:BK (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5013 8glv:BM (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5014 8glv:BO (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5015 8glv:BS (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5016 8glv:BU (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5017 8glv:BW (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5018 8glv:BY (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5019 8glv:Ba (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5020 8glv:Bf (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5021 8glv:Bh (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5022 8glv:Bj (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5023 8glv:Bl (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5024 8glv:Bn (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5025 8glv:Bs (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5026 8glv:Bu (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5027 8glv:Bw (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5028 8glv:By (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5029 8glv:C0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5030 8glv:C2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5031 8glv:C4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5032 8glv:C6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5033 8glv:C8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5034 8glv:CE (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5035 8glv:CG (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5036 8glv:CI (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5037 8glv:CK (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5038 8glv:CM (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5039 8glv:CR (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5040 8glv:CT (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5041 8glv:CV (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5042 8glv:CX (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5043 8glv:CZ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5044 8glv:Ce (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5045 8glv:Cg (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5046 8glv:Ci (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5047 8glv:Ck (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5048 8glv:Cm (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5049 8glv:Cr (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5050 8glv:Ct (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5051 8glv:Cv (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5052 8glv:Cx (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5053 8glv:Cz (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5054 8glv:D0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5055 8glv:D2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5056 8glv:D4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5057 8glv:D6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5058 8glv:D8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5059 8glv:DE (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5060 8glv:DG (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5061 8glv:DI (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5062 8glv:DK (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5063 8glv:DM (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5064 8glv:DR (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5065 8glv:DT (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5066 8glv:DV (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5067 8glv:DX (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5068 8glv:DZ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5069 8glv:De (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5070 8glv:Dg (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5071 8glv:Di (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5072 8glv:Dk (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5073 8glv:Dm (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5074 8glv:Dr (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5075 8glv:Dt (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5076 8glv:Dv (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5077 8glv:Dx (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5078 8glv:Dz (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5079 8glv:E0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5080 8glv:E2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5081 8glv:E4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5082 8glv:E6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5083 8glv:E8 (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5084 8glv:ED (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5085 8glv:EF (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5086 8glv:EH (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5087 8glv:EJ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5088 8glv:EL (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5089 8glv:EQ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5090 8glv:ES (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5091 8glv:EU (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5092 8glv:EW (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5093 8glv:EY (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5094 8glv:Ed (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5095 8glv:Ef (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5096 8glv:Eh (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5097 8glv:Ej (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5098 8glv:El (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5099 8glv:Eq (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5100 8glv:Es (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5101 8glv:Eu (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5102 8glv:Ew (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5103 8glv:F0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5104 8glv:F2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5105 8glv:F6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5106 8glv:F8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5107 8glv:FC (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5108 8glv:FE (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5109 8glv:FG (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5110 8glv:FI (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5111 8glv:FK (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5112 8glv:FP (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5113 8glv:FR (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5114 8glv:FT (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5115 8glv:FV (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5116 8glv:FX (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5117 8glv:Fc (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5118 8glv:Fe (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5119 8glv:Fg (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5120 8glv:Fi (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5121 8glv:Fk (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5122 8glv:Fp (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5123 8glv:Fr (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5124 8glv:Ft (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5125 8glv:Fv (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5126 8glv:Fx (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5127 8glv:G0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5128 8glv:G2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5129 8glv:G4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5130 8glv:G6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5131 8glv:G8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5132 8glv:GB (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5133 8glv:GD (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5134 8glv:GF (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5135 8glv:GH (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5136 8glv:GJ (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5137 8glv:H2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5138 8glv:H4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5139 8glv:H6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5140 8glv:H8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5141 8glv:I0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5142 8glv:I2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5143 8glv:I4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5144 8glv:I8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5145 8glv:IK (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5146 8glv:IM (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5147 8glv:IW (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5148 8glv:IY (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5149 8glv:Ij (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5150 8glv:Il (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5151 8glv:Iw (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5152 8glv:Iy (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5153 8glv:J0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5154 8glv:J2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5155 8glv:J4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5156 8glv:J6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5157 8glv:J8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5158 8glv:JJ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5159 8glv:JL (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5160 8glv:JU (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5161 8glv:JW (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5162 8glv:JY (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5163 8glv:Jh (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5164 8glv:Jj (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5165 8glv:Jl (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5166 8glv:Ju (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5167 8glv:Jw (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5168 8glv:Jy (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5169 8glv:K0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5170 8glv:K4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5171 8glv:K6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5172 8glv:K8 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5173 8glv:KH (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5174 8glv:KJ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5175 8glv:KL (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5176 8glv:KU (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5177 8glv:KW (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5178 8glv:KY (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5179 8glv:Kh (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5180 8glv:Kj (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5181 8glv:Kl (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5182 8glv:Kv (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5183 8glv:Kx (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5184 8glv:L0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5185 8glv:L2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5186 8glv:L4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5187 8glv:L6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5188 8glv:LH (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5189 8glv:LJ (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5190 8glv:LT (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5191 8glv:LV (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5192 8glv:LX (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5193 8glv:Lh (3.1) BS02 GDP ? GO:0003924 ... P04690 37258679
    5194 8glv:Lj (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5195 8glv:Lu (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5196 8glv:Lw (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5197 8glv:M0 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5198 8glv:M2 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5199 8glv:M4 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    5200 8glv:M6 (3.1) BS01 GDP ? GO:0003924 ... P04690 37258679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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