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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 8fr3:B (2.23) BS01 GDP ? GO:0003723 ... P0CE47 37681945
    4602 8fw5:D (3.08) BS01 GDP 3.6.5.- GO:0000329 ... O74824 37453417
    4603 8fw5:E (3.08) BS01 GDP 3.6.5.- GO:0000329 ... O74544 37453417
    4604 8fwp:A (2.22) BS01 GDP ? GO:0005525 ... P25342 37315820
    4605 8fwp:B (2.22) BS01 GDP ? GO:0005525 ... P32457 37315820
    4606 8g2z:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4607 8g2z:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4608 8g2z:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4609 8g2z:AH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4610 8g2z:AJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4611 8g2z:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4612 8g2z:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4613 8g2z:BB (4.1) BS03 GDP ? GO:0000226 ... P41352 37061538
    4614 8g2z:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4615 8g2z:BF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4616 8g2z:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4617 8g2z:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4618 8g2z:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4619 8g2z:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4620 8g2z:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4621 8g2z:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4622 8g2z:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4623 8g2z:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4624 8g2z:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4625 8g2z:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4626 8g2z:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4627 8g2z:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4628 8g2z:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4629 8g2z:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4630 8g2z:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4631 8g2z:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4632 8g2z:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4633 8g2z:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4634 8g2z:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4635 8g2z:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4636 8g2z:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4637 8g2z:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4638 8g2z:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4639 8g2z:EL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4640 8g2z:EN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4641 8g2z:FB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4642 8g2z:FD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4643 8g2z:FF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4644 8g2z:FH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4645 8g2z:FJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4646 8g2z:FL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4647 8g2z:FN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4648 8g2z:GB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4649 8g2z:GD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4650 8g2z:GF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4651 8g2z:GH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4652 8g2z:GJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4653 8g2z:GL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4654 8g2z:GN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4655 8g2z:HB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4656 8g2z:HD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4657 8g2z:HF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4658 8g2z:HH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4659 8g2z:HJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4660 8g2z:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4661 8g2z:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4662 8g2z:IB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4663 8g2z:ID (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4664 8g2z:IF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4665 8g2z:IH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4666 8g2z:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4667 8g2z:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4668 8g2z:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4669 8g2z:JB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4670 8g2z:JD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4671 8g2z:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4672 8g2z:JH (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4673 8g2z:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4674 8g2z:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4675 8g2z:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4676 8g2z:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4677 8g2z:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4678 8g2z:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4679 8g2z:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4680 8g2z:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4681 8g2z:KL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4682 8g2z:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4683 8g2z:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4684 8g2z:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4685 8g2z:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4686 8g2z:LH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4687 8g2z:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4688 8g2z:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4689 8g2z:LN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4690 8g2z:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4691 8g2z:MD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4692 8g2z:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4693 8g2z:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4694 8g2z:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4695 8g2z:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4696 8g2z:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4697 8g2z:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4698 8g2z:ND (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4699 8g2z:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4700 8g2z:NH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4701 8g2z:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4702 8g2z:NL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4703 8g2z:NN (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4704 8g2z:OB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4705 8g2z:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4706 8g2z:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4707 8g2z:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4708 8g2z:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4709 8g2z:OL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4710 8g2z:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4711 8g2z:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4712 8g2z:PD (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4713 8g2z:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4714 8g2z:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4715 8g2z:PJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4716 8g2z:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4717 8g2z:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4718 8g2z:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4719 8g2z:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4720 8g2z:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4721 8g2z:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4722 8g2z:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4723 8g2z:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4724 8g2z:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4725 8g2z:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4726 8g2z:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4727 8g2z:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4728 8g2z:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4729 8g2z:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4730 8g2z:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4731 8g2z:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4732 8g2z:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4733 8g2z:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4734 8g2z:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4735 8g2z:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4736 8g2z:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4737 8g2z:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4738 8g2z:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4739 8g2z:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4740 8g2z:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4741 8g2z:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4742 8g2z:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4743 8g2z:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4744 8g2z:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4745 8g2z:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4746 8g2z:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4747 8g2z:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4748 8g2z:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4749 8g2z:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4750 8g2z:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4751 8g2z:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4752 8g2z:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4753 8g2z:VB (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4754 8g2z:VD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4755 8g2z:VF (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4756 8g2z:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4757 8g2z:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4758 8g2z:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4759 8g2z:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4760 8g2z:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4761 8g2z:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4762 8g2z:WF (4.1) BS02 GDP ? GO:0000226 ... P41352 37061538
    4763 8g2z:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4764 8g2z:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4765 8g2z:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4766 8g2z:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 37061538
    4767 8g3d:AB (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4768 8g3d:AD (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4769 8g3d:AF (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4770 8g3d:AH (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4771 8g3d:AJ (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4772 8g3d:AL (3.7) BS02 GDP ? GO:0000226 ... P41352 37061538
    4773 8g3d:AN (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4774 8g3d:BB (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4775 8g3d:BD (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4776 8g3d:BF (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4777 8g3d:BH (3.7) BS02 GDP ? GO:0000226 ... P41352 37061538
    4778 8g3d:BJ (3.7) BS02 GDP ? GO:0000226 ... P41352 37061538
    4779 8g3d:BL (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4780 8g3d:BN (3.7) BS02 GDP ? GO:0000226 ... P41352 37061538
    4781 8g3d:CB (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4782 8g3d:CD (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4783 8g3d:CF (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4784 8g3d:CH (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4785 8g3d:CJ (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4786 8g3d:CL (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4787 8g3d:CN (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4788 8g3d:DB (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4789 8g3d:DD (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4790 8g3d:DF (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4791 8g3d:DH (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4792 8g3d:DJ (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4793 8g3d:DL (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4794 8g3d:DN (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4795 8g3d:EB (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4796 8g3d:ED (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4797 8g3d:EF (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4798 8g3d:EH (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4799 8g3d:EJ (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    4800 8g3d:EL (3.7) BS01 GDP ? GO:0000226 ... P41352 37061538
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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