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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 7ung:TD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4202 7ung:TF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4203 7ung:TH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4204 7ung:TJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4205 7ung:TL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4206 7ung:TN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4207 7ung:TP (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4208 7ung:UD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4209 7ung:UF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4210 7ung:UH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4211 7ung:UJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4212 7ung:UL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4213 7ung:UN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4214 7ung:UP (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4215 7ung:VD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4216 7ung:VF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4217 7ung:VH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4218 7ung:VJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4219 7ung:VL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4220 7ung:VN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4221 7ung:VP (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4222 7ung:WD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4223 7ung:WF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4224 7ung:WH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4225 7ung:WJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4226 7ung:WL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4227 7ung:WN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4228 7ung:WP (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4229 7unq:x (3.4) BS01 GDP ? GO:0003743 ... Q9HV55 N/A
    4230 7unr:x (2.9) BS03 GDP ? GO:0003743 ... Q9HV55 N/A
    4231 7unt:x (3.6) BS01 GDP ? GO:0003743 ... Q9HV55 N/A
    4232 7unu:x (2.9) BS02 GDP ? GO:0003743 ... Q9HV55 N/A
    4233 7uoo:b (2.34) BS02 GDP ? GO:0000054 ... Q02892 36864048
    4234 7uqb:b (2.43) BS03 GDP ? GO:0000054 ... Q02892 36864048
    4235 7uqb:m (2.43) BS02 GDP ? GO:0000055 ... P53742 36864048
    4236 7uqz:b (2.44) BS03 GDP ? GO:0000054 ... Q02892 36864048
    4237 7uqz:m (2.44) BS02 GDP ? GO:0000055 ... P53742 36864048
    4238 7us5:A (2.1) BS02 GDP ? GO:0000166 ... Q5M6Q7 35715226
    4239 7us5:B (2.1) BS02 GDP ? GO:0000166 ... Q5M6Q7 35715226
    4240 7us5:C (2.1) BS02 GDP ? GO:0000166 ... Q5M6Q7 35715226
    4241 7us5:D (2.1) BS02 GDP ? GO:0000166 ... Q5M6Q7 35715226
    4242 7uui:m (2.9) BS02 GDP ? GO:0000055 ... P53742 36864048
    4243 7ux2:C (2.9) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4244 7ux2:J (2.9) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4245 7uxc:E (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4246 7uxc:L (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4247 7uxh:G (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4248 7uxh:N (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4249 7uxh:W (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4250 7uxh:d (3.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 36697823
    4251 7v08:b (2.36) BS03 GDP ? GO:0000054 ... Q02892 36864048
    4252 7v08:m (2.36) BS02 GDP ? GO:0000055 ... P53742 36864048
    4253 7vf6:A (1.703) BS03 GDP 6.3.4.25 GO:0000166 ... A0A7L7SI10 37308591
    4254 7vf6:B (1.703) BS03 GDP 6.3.4.25 GO:0000166 ... A0A7L7SI10 37308591
    4255 7vmg:B (2.39) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4256 7vmg:D (2.39) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4257 7vmj:B (2.9) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4258 7vmj:D (2.9) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4259 7vmk:B (2.5) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4260 7vmk:D (2.5) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4261 7vok:A (3.4) BS01 GDP ? GO:0001666 ... P9WNN1 36192483
    4262 7vok:B (3.4) BS01 GDP ? GO:0001666 ... P9WNN1 36192483
    4263 7vok:C (3.4) BS01 GDP ? GO:0001666 ... P9WNN1 36192483
    4264 7vok:D (3.4) BS01 GDP ? GO:0001666 ... P9WNN1 36192483
    4265 7vuj:A (3.8) BS01 GDP ? GO:0003924 ... P63092 34916631
    4266 7w5r:A (3.87) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4267 7w5r:E (3.87) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4268 7w5r:I (3.87) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4269 7w5r:M (3.87) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4270 7w5r:Q (3.87) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4271 7w5r:U (3.87) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36516586
    4272 7wqy:A (1.95) BS01 GDP N/A GO:0003924 ... N/A N/A
    4273 7wqy:B (1.95) BS01 GDP N/A GO:0003924 ... N/A N/A
    4274 7wza:A (1.50029) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 36781028
    4275 7wzc:A (1.79945) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 36781028
    4276 7x4n:B (2.88) BS01 GDP ? GO:0000226 ... P02554 36065637
    4277 7x56:A (3.5) BS01 GDP N/A N/A N/A N/A
    4278 7x56:B (3.5) BS01 GDP N/A N/A N/A N/A
    4279 7x56:C (3.5) BS01 GDP N/A N/A N/A N/A
    4280 7x56:D (3.5) BS01 GDP N/A N/A N/A N/A
    4281 7x56:E (3.5) BS01 GDP N/A N/A N/A N/A
    4282 7xkj:A (3.0) BS01 GDP 3.6.5.2 GO:0003924 ... A0A7J7Z4L6 N/A
    4283 7xpr:A (2.1) BS01 GDP ? GO:0046872 ... G8HX37 36642179
    4284 7xpr:B (2.1) BS01 GDP ? GO:0046872 ... G8HX37 36642179
    4285 7xps:A (2.1) BS01 GDP ? GO:0046872 ... G8HX37 36642179
    4286 7xps:B (2.1) BS01 GDP ? GO:0046872 ... G8HX37 36642179
    4287 7xqx:B (3.36) BS01 GDP ? GO:0000226 ... P02554 N/A
    4288 7xqx:D (3.36) BS01 GDP ? GO:0000226 ... P02554 N/A
    4289 7xqy:B (2.35) BS01 GDP ? GO:0000226 ... P02554 N/A
    4290 7xqy:D (2.35) BS01 GDP ? GO:0000226 ... P02554 N/A
    4291 7xr0:B (2.7) BS01 GDP ? GO:0000226 ... P02554 N/A
    4292 7xr0:D (2.7) BS01 GDP ? GO:0000226 ... P02554 N/A
    4293 7xr1:B (2.81) BS01 GDP ? GO:0000226 ... P02554 N/A
    4294 7xr1:D (2.81) BS01 GDP ? GO:0000226 ... P02554 N/A
    4295 7y4a:A (1.6) BS02 GDP ? GO:0003924 ... P84095 36932164
    4296 7y4a:C (1.6) BS02 GDP ? GO:0003924 ... P84095 36932164
    4297 7y4a:E (1.6) BS02 GDP ? GO:0003924 ... P84095 36932164
    4298 7y4a:G (1.6) BS02 GDP ? GO:0003924 ... P84095 36932164
    4299 7y4i:A (2.85) BS01 GDP 2.4.1.221
    2.4.1.255    		 GO:0005515 ... Q96301 36456586
    4300 7ycc:A (1.79) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35926326
    4301 7ycc:B (1.79) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35926326
    4302 7ycc:C (1.79) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35926326
    4303 7yce:A (1.8) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35926326
    4304 7yhn:B (2.6) BS01 GDP ? GO:0000226 ... P02554 36511661
    4305 7yop:A (2.20003) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4306 7yop:B (2.20003) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4307 7yso:B (3.6) BS01 GDP ? GO:0000226 ... P02554 37749104
    4308 7ysp:B (3.9) BS01 GDP ? GO:0000226 ... P02554 37749104
    4309 7ysz:A (2.30004) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4310 7ysz:A (2.30004) BS02 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4311 7ysz:B (2.30004) BS01 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4312 7ysz:B (2.30004) BS02 GDP ? GO:0003924 ... A0A4D8RL11 38718863
    4313 7yua:A (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    4314 7yua:B (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    4315 7yua:C (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    4316 7yua:D (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    4317 7yuz:A (1.878) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37874670
    4318 7yv1:A (1.454) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37874670
    4319 7yyp:A (2.9) BS01 GDP ? GO:0003743 ... Q9UZK7 35694843
    4320 7yyv:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4321 7yyw:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4322 7yyx:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4323 7yyy:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4324 7yyz:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4325 7yz0:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4326 7yz1:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4327 7yz2:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4328 7yz3:B (1.8) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4329 7yz5:B (2.11) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    4330 7z01:B (1.82) BS01 GDP ? GO:0000226 ... Q6B856 35290733
    4331 7z02:B (2.36) BS01 GDP ? GO:0000226 ... Q6B856 35290733
    4332 7z0f:B (2.396) BS01 GDP N/A GO:0003924 ... N/A 35507869
    4333 7z0g:B (3.487) BS01 GDP N/A GO:0003924 ... N/A 35507869
    4334 7z0g:S (3.487) BS01 GDP N/A GO:0003924 ... N/A 35507869
    4335 7z2n:B (2.17) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    4336 7z2n:D (2.17) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    4337 7z2p:B (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    4338 7z2p:D (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    4339 7z6s:B (2.9) BS01 GDP ? GO:0000226 ... Q13509 35482892
    4340 7z6s:H (2.9) BS01 GDP ? GO:0000226 ... Q13509 35482892
    4341 7z7d:B (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35404502
    4342 7z7d:D (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35404502
    4343 7zhk:A (2.4) BS01 GDP ? GO:0000166 ... A0A0U2WWJ1 37962382
    4344 7zhk:B (2.4) BS01 GDP ? GO:0000166 ... A0A0U2WWJ1 37962382
    4345 7zhk:C (2.4) BS01 GDP ? GO:0000166 ... A0A0U2WWJ1 37962382
    4346 7zx2:B (2.5) BS01 GDP ? GO:0000226 ... Q6B856 36462501
    4347 7zx2:D (2.5) BS01 GDP ? GO:0000226 ... Q6B856 36462501
    4348 7zyw:B (2.45) BS01 GDP ? GO:0000226 ... Q6B856 38294341
    4349 7zyw:D (2.45) BS01 GDP ? GO:0000226 ... Q6B856 38294341
    4350 8a0l:B (1.9981) BS01 GDP ? GO:0000226 ... Q6B856 36462501
    4351 8a0l:D (1.9981) BS01 GDP ? GO:0000226 ... Q6B856 36462501
    4352 8a9t:B (2.304) BS01 GDP ? GO:0000226 ... Q6B856 36242921
    4353 8a9t:D (2.304) BS01 GDP ? GO:0000226 ... Q6B856 36242921
    4354 8a9z:B (2.294) BS01 GDP ? GO:0000226 ... Q6B856 36242921
    4355 8a9z:D (2.294) BS01 GDP ? GO:0000226 ... Q6B856 36242921
    4356 8afb:A (1.12) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4357 8afc:A (2.41) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4358 8afc:B (2.41) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4359 8afd:A (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4360 8afd:B (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4361 8afd:C (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4362 8afd:D (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4363 8ahm:B (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761
    4364 8ahm:D (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761
    4365 8alk:B (2.15) BS01 GDP 3.6.5.2 GO:0003924 ... Q9H0U4 37076474
    4366 8any:AX (2.85) BS03 GDP ? GO:0003723 ... P51398 39134711
    4367 8aq5:A (1.8) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36399068
    4368 8aq7:A (1.65) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36399068
    4369 8aq7:B (1.65) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36399068
    4370 8asn:B (2.571) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4371 8asn:D (2.571) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    4372 8azr:A (1.6) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4373 8azv:A (1.05) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4374 8azx:A (1.04) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4375 8azy:A (1.09) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4376 8azz:A (1.02) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4377 8b00:A (1.04) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    4378 8b6i:A (1.7) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37395055
    4379 8b6i:B (1.7) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37395055
    4380 8b78:A (1.11) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37395055
    4381 8b7a:B (2.25) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4382 8b7a:D (2.25) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4383 8b7b:B (2.25) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4384 8b7b:D (2.25) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4385 8b7c:B (1.9) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4386 8b7c:D (1.9) BS01 GDP ? GO:0000226 ... Q6B856 36468686
    4387 8bde:B (1.902) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4388 8bde:D (1.902) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4389 8bdf:B (1.95) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4390 8bdf:D (1.95) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4391 8bdg:B (2.35) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4392 8bdg:D (2.35) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    4393 8be3:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 39043660
    4394 8be3:R (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 39043660
    4395 8blr:A (1.4) BS01 GDP 3.6.5.2 N/A P01116 39179604
    4396 8bos:G (2.1) BS01 GDP ? GO:0043087 ... P20936 N/A
    4397 8bos:R (2.1) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    4398 8bsi:a (3.4) BS04 GDP ? GO:0003746 ... A8BU59 36912103
    4399 8bwg:R (1.32) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 38297137
    4400 8c0f:B (2.1005) BS01 GDP ? GO:0000226 ... Q6B856 34315764
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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