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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 7szs:A (1.5) BS01 GDP ? GO:0000917 ... A6TG68 N/A
    4002 7szs:B (1.5) BS01 GDP ? GO:0000917 ... A6TG68 N/A
    4003 7t1f:A (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37681415
    4004 7t1f:B (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37681415
    4005 7t1f:C (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37681415
    4006 7t3b:D (3.9) BS01 GDP 3.6.5.- GO:0003924 ... Q7L523 35338845
    4007 7t3b:E (3.9) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 35338845
    4008 7t3c:D (4.0) BS01 GDP 3.6.5.- GO:0003924 ... Q7L523 35338845
    4009 7t3c:E (4.0) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 35338845
    4010 7t3c:K (4.0) BS01 GDP 3.6.5.- GO:0003924 ... Q7L523 35338845
    4011 7t47:A (1.27) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    4012 7tam:A (1.87) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    4013 7thy:A (5.2) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0005525 ... Q5S007 36510024
    4014 7thz:A (5.0) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0005525 ... Q5S007 36510024
    4015 7tle:A (1.98717) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 35864332
    4016 7tlg:A (1.80001) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35864332
    4017 7tlg:B (1.80001) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35864332
    4018 7tlk:A (1.71102) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35864332
    4019 7tlk:B (1.71102) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35864332
    4020 7tqx:B (2.8) BS01 GDP ? GO:0000226 ... P02554 35859148
    4021 7tqy:B (2.6) BS01 GDP ? GO:0000226 ... P02554 35859148
    4022 7tqz:B (2.7) BS01 GDP ? GO:0000226 ... P02554 35859148
    4023 7tr0:B (2.7) BS01 GDP ? GO:0000226 ... P02554 35859148
    4024 7tr1:B (3.1) BS02 GDP ? GO:0000226 ... P02554 35859148
    4025 7tr2:B (3.0) BS01 GDP ? GO:0000226 ... P02554 35859148
    4026 7tr3:B (3.9) BS01 GDP ? GO:0000226 ... P02554 35859148
    4027 7ttd:B (2.27) BS01 GDP ? GO:0000226 ... P02554 37082747
    4028 7tte:B (2.7) BS01 GDP ? GO:0000226 ... P02554 37082747
    4029 7ttf:B (2.1) BS01 GDP ? GO:0000226 ... P02554 37082747
    4030 7u2p:B (2.596) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 35637242
    4031 7u8h:A (1.702) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4032 7u8h:B (1.702) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4033 7u8h:C (1.702) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4034 7u8h:D (1.702) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    4035 7ug6:m (2.9) BS02 GDP ? GO:0000055 ... P53742 36536102
    4036 7ug7:EF (2.58) BS06 GDP 3.6.5.- GO:0003746 ... P0A6M8 35500116
    4037 7ule:A (1.7) BS01 GDP 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    4038 7un1:AB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4039 7un1:AD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4040 7un1:AF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4041 7un1:BA (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4042 7un1:BD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4043 7un1:BF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4044 7un1:CB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4045 7un1:CD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4046 7un1:CF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4047 7un1:DB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4048 7un1:DD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4049 7un1:DF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4050 7un1:EB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4051 7un1:ED (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4052 7un1:EF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4053 7un1:FD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4054 7un1:FF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4055 7un1:FH (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4056 7un1:GD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4057 7un1:GF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4058 7un1:GH (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4059 7un1:HD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4060 7un1:HF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4061 7un1:HH (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4062 7un1:ID (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4063 7un1:IF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4064 7un1:IH (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4065 7un1:JD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4066 7un1:JF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4067 7un1:KD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4068 7un1:KF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4069 7un1:KH (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4070 7un1:LB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4071 7un1:LD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4072 7un1:LF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4073 7un1:MB (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4074 7un1:MD (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4075 7un1:MF (6.0) BS01 GDP ? GO:0000226 ... P68371 36191189
    4076 7ung:AB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4077 7ung:AD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4078 7ung:AF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4079 7ung:AH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4080 7ung:AJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4081 7ung:AL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4082 7ung:BB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4083 7ung:BD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4084 7ung:BF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4085 7ung:BH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4086 7ung:BJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4087 7ung:BL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4088 7ung:CB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4089 7ung:CD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4090 7ung:CF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4091 7ung:CH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4092 7ung:CJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4093 7ung:CL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4094 7ung:DB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4095 7ung:DD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4096 7ung:DF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4097 7ung:DH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4098 7ung:DJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4099 7ung:DL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4100 7ung:EB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4101 7ung:ED (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4102 7ung:EF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4103 7ung:EH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4104 7ung:EJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4105 7ung:EL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4106 7ung:EN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4107 7ung:FB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4108 7ung:FD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4109 7ung:FF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4110 7ung:FH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4111 7ung:FJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4112 7ung:FL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4113 7ung:FN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4114 7ung:GB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4115 7ung:GD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4116 7ung:GF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4117 7ung:GH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4118 7ung:GJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4119 7ung:GL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4120 7ung:GN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4121 7ung:HB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4122 7ung:HD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4123 7ung:HF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4124 7ung:HH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4125 7ung:HJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4126 7ung:HL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4127 7ung:HN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4128 7ung:IB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4129 7ung:ID (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4130 7ung:IF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4131 7ung:IH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4132 7ung:IJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4133 7ung:IL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4134 7ung:IN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4135 7ung:JB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4136 7ung:JD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4137 7ung:JF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4138 7ung:JH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4139 7ung:JJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4140 7ung:JL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4141 7ung:JN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4142 7ung:KB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4143 7ung:KD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4144 7ung:KF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4145 7ung:KH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4146 7ung:KJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4147 7ung:KL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4148 7ung:KN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4149 7ung:LB (3.6) BS02 GDP ? GO:0000226 ... P68371 36191189
    4150 7ung:LD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4151 7ung:LF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4152 7ung:LH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4153 7ung:LJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4154 7ung:LL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4155 7ung:LN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4156 7ung:MB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4157 7ung:MD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4158 7ung:MF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4159 7ung:MH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4160 7ung:MJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4161 7ung:ML (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4162 7ung:MN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4163 7ung:NB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4164 7ung:ND (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4165 7ung:NF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4166 7ung:NH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4167 7ung:NJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4168 7ung:NL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4169 7ung:NN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4170 7ung:OB (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4171 7ung:OD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4172 7ung:OF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4173 7ung:OH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4174 7ung:OJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4175 7ung:OL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4176 7ung:ON (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4177 7ung:PD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4178 7ung:PF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4179 7ung:PH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4180 7ung:PJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4181 7ung:PL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4182 7ung:PN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4183 7ung:QD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4184 7ung:QF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4185 7ung:QH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4186 7ung:QJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4187 7ung:QL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4188 7ung:QN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4189 7ung:RD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4190 7ung:RF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4191 7ung:RH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4192 7ung:RJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4193 7ung:RL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4194 7ung:RN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4195 7ung:SD (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4196 7ung:SF (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4197 7ung:SH (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4198 7ung:SJ (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4199 7ung:SL (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    4200 7ung:SN (3.6) BS01 GDP ? GO:0000226 ... P68371 36191189
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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