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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 7rs5:Q (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    3802 7rs5:S (3.9) BS01 GDP ? GO:0000226 ... P02554 N/A
    3803 7rt1:A (1.27) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34889605
    3804 7rt2:A (1.59) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34889605
    3805 7rt3:A (1.56) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34889605
    3806 7rt4:A (2.1) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34889605
    3807 7rt5:A (1.29) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34889605
    3808 7s0y:B (2.79) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 34678063
    3809 7s0z:C (2.34) BS01 GDP 3.6.5.- GO:0003924 ... P10301 34678063
    3810 7s0z:D (2.34) BS01 GDP 3.6.5.- GO:0003924 ... P10301 34678063
    3811 7s5e:C (2.4) BS01 GDP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    3812 7s5e:G (2.4) BS01 GDP 2.7.4.8 GO:0004385 ... B2FT06 N/A
    3813 7sgs:C (3.3) BS01 GDP ? GO:0000226 ... P02554 35050657
    3814 7siq:A (2.95) BS01 GDP ? GO:0003924 ... B2FR00 N/A
    3815 7sj7:B (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3816 7sj7:D (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3817 7sj7:F (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3818 7sj7:G (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3819 7sj7:H (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3820 7sj7:I (3.8) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3821 7sj8:B (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3822 7sj8:D (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3823 7sj8:F (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3824 7sj8:G (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3825 7sj8:H (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3826 7sj8:I (3.6) BS01 GDP ? GO:0000226 ... Q13509 34996871
    3827 7som:AA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3828 7som:AC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3829 7som:AE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3830 7som:AG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3831 7som:AI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3832 7som:AK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3833 7som:BA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3834 7som:BC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3835 7som:BE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3836 7som:BG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3837 7som:BI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3838 7som:BK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3839 7som:CA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3840 7som:CC (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    3841 7som:CE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3842 7som:CG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3843 7som:CI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3844 7som:CK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3845 7som:DC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3846 7som:DE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3847 7som:DG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3848 7som:DI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3849 7som:DK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3850 7som:EA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3851 7som:EC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3852 7som:EE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3853 7som:EG (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    3854 7som:EI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3855 7som:EK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3856 7som:FA (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3857 7som:FC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3858 7som:FE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3859 7som:FG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3860 7som:FI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3861 7som:FK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3862 7som:GC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3863 7som:GE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3864 7som:GG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3865 7som:GI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3866 7som:GK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3867 7som:GM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3868 7som:HC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3869 7som:HE (3.7) BS02 GDP ? GO:0003924 ... P04690 35578023
    3870 7som:HG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3871 7som:HI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3872 7som:HK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3873 7som:HM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3874 7som:IC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3875 7som:IE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3876 7som:IG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3877 7som:II (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3878 7som:IK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3879 7som:IM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3880 7som:JC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3881 7som:JE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3882 7som:JG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3883 7som:JI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3884 7som:JK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3885 7som:JM (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3886 7som:KC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3887 7som:KE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3888 7som:KG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3889 7som:KI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3890 7som:KK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3891 7som:LC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3892 7som:LE (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3893 7som:LG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3894 7som:LI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3895 7som:LK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3896 7som:MC (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3897 7som:ME (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3898 7som:MG (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3899 7som:MI (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3900 7som:MK (3.7) BS01 GDP ? GO:0003924 ... P04690 35578023
    3901 7sq2:A (2.6) BS03 GDP ? GO:0001501 ... P21279 20966218
    3902 7sqc:NC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3903 7sqc:NE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3904 7sqc:NG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3905 7sqc:NI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3906 7sqc:NK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3907 7sqc:NM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3908 7sqc:NO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3909 7sqc:OC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3910 7sqc:OE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3911 7sqc:OG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3912 7sqc:OI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3913 7sqc:OK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3914 7sqc:OM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3915 7sqc:OO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3916 7sqc:OQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3917 7sqc:PC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3918 7sqc:PE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3919 7sqc:PG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3920 7sqc:PI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3921 7sqc:PK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3922 7sqc:PM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3923 7sqc:PO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3924 7sqc:PQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3925 7sqc:QC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3926 7sqc:QE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3927 7sqc:QG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3928 7sqc:QI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3929 7sqc:QK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3930 7sqc:QM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3931 7sqc:QO (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    3932 7sqc:QQ (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3933 7sqc:RC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3934 7sqc:RE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3935 7sqc:RG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3936 7sqc:RI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3937 7sqc:RK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3938 7sqc:RM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3939 7sqc:RO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3940 7sqc:SC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3941 7sqc:SE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3942 7sqc:SG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3943 7sqc:SI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3944 7sqc:SK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3945 7sqc:SM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3946 7sqc:SO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3947 7sqc:TC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3948 7sqc:TE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3949 7sqc:TG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3950 7sqc:TI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3951 7sqc:TK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3952 7sqc:TM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3953 7sqc:TO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3954 7sqc:UC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3955 7sqc:UE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3956 7sqc:UG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3957 7sqc:UI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3958 7sqc:UK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3959 7sqc:UM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3960 7sqc:UO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3961 7sqc:VC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3962 7sqc:VE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3963 7sqc:VG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3964 7sqc:VI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3965 7sqc:VK (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    3966 7sqc:VM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3967 7sqc:VO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3968 7sqc:WA (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3969 7sqc:WC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3970 7sqc:WE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3971 7sqc:WG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3972 7sqc:WI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3973 7sqc:WK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3974 7sqc:WM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3975 7sqc:WO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3976 7sqc:XA (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3977 7sqc:XC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3978 7sqc:XE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3979 7sqc:XG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3980 7sqc:XI (3.8) BS02 GDP ? GO:0003924 ... P04690 35578023
    3981 7sqc:XK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3982 7sqc:XM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3983 7sqc:XO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3984 7sqc:YC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3985 7sqc:YE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3986 7sqc:YG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3987 7sqc:YI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3988 7sqc:YK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3989 7sqc:YM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3990 7sqc:YO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3991 7sqc:ZC (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3992 7sqc:ZE (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3993 7sqc:ZG (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3994 7sqc:ZI (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3995 7sqc:ZK (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3996 7sqc:ZM (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3997 7sqc:ZO (3.8) BS01 GDP ? GO:0003924 ... P04690 35578023
    3998 7ssd:8 (3.3) BS05 GDP N/A GO:0003746 ... N/A 34903725
    3999 7ssl:8 (3.8) BS04 GDP N/A GO:0003746 ... N/A 34903725
    4000 7st7:8 (3.2) BS04 GDP N/A GO:0003746 ... N/A 34903725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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