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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 7mo4:A (2.4) BS01 GDP 3.6.5.- GO:0000054 ... P62826 35679405
    3402 7mo4:C (2.4) BS01 GDP 3.6.5.- GO:0000054 ... P62826 35679405
    3403 7mo5:A (1.55) BS01 GDP 3.6.5.- GO:0000054 ... P62826 35679405
    3404 7moq:Q (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3405 7moq:U (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3406 7moq:Y (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3407 7moq:q (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3408 7moq:u (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3409 7moq:y (8.0) BS01 GDP ? GO:0000226 ... P41352 34338432
    3410 7mqu:A (-1.00) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34176062
    3411 7mwg:B (3.5) BS01 GDP ? GO:0000226 ... P41352 34556869
    3412 7n2c:EF (2.72) BS06 GDP 3.6.5.- GO:0003746 ... P0A6M8 34234344
    3413 7n32:b (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3414 7n32:f (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3415 7n32:h (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3416 7n32:j (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3417 7n32:l (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3418 7n32:n (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3419 7n32:p (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3420 7n32:r (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3421 7n32:t (4.5) BS01 GDP ? GO:0000226 ... P41352 34556869
    3422 7n32:v (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3423 7n32:x (4.5) BS02 GDP ? GO:0000226 ... P41352 34556869
    3424 7n61:1a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3425 7n61:1c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3426 7n61:1e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3427 7n61:1g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3428 7n61:2a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3429 7n61:2c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3430 7n61:2e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3431 7n61:2g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3432 7n61:3a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3433 7n61:3c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3434 7n61:3e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3435 7n61:3g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3436 7n61:4a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3437 7n61:4c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3438 7n61:4e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3439 7n61:4g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3440 7n61:5a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3441 7n61:5c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3442 7n61:5e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3443 7n61:5g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3444 7n61:6a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3445 7n61:6c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3446 7n61:6e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3447 7n61:6g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3448 7n61:7a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3449 7n61:7c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3450 7n61:7e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3451 7n61:7g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3452 7n61:8a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3453 7n61:8c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3454 7n61:8e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3455 7n61:8g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3456 7n61:9a (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3457 7n61:9c (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3458 7n61:9e (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3459 7n61:9g (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3460 7n61:Aa (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3461 7n61:Ac (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3462 7n61:Ae (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3463 7n61:Ag (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3464 7n61:Ba (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3465 7n61:Bc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3466 7n61:Be (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3467 7n61:Bg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3468 7n61:Ca (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3469 7n61:Cc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3470 7n61:Ce (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3471 7n61:Cg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3472 7n61:Da (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3473 7n61:Dc (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3474 7n61:De (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3475 7n61:Dg (3.5) BS01 GDP ? GO:0003924 ... P04690 35578022
    3476 7n6g:1a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3477 7n6g:1c (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3478 7n6g:1e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3479 7n6g:1g (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3480 7n6g:2a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3481 7n6g:2c (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3482 7n6g:2e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3483 7n6g:2g (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3484 7n6g:3a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3485 7n6g:3c (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3486 7n6g:3e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3487 7n6g:3g (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3488 7n6g:4a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3489 7n6g:4c (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3490 7n6g:4e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3491 7n6g:4g (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3492 7n6g:5a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3493 7n6g:5c (3.6) BS03 GDP ? GO:0003924 ... P04690 35578022
    3494 7n6g:5e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3495 7n6g:5g (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3496 7n6g:6a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3497 7n6g:6c (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3498 7n6g:6e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3499 7n6g:6g (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3500 7n6g:7a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3501 7n6g:7c (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3502 7n6g:7e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3503 7n6g:7g (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3504 7n6g:8a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3505 7n6g:8c (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3506 7n6g:8e (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3507 7n6g:8g (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3508 7n6g:9a (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3509 7n6g:9c (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3510 7n6g:9e (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3511 7n6g:9g (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3512 7n6g:Aa (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3513 7n6g:Ac (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3514 7n6g:Ae (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3515 7n6g:Ag (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3516 7n6g:Ba (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3517 7n6g:Bc (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3518 7n6g:Be (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3519 7n6g:Bg (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3520 7n6g:Ca (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3521 7n6g:Cc (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3522 7n6g:Ce (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3523 7n6g:Cg (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3524 7n6g:Da (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3525 7n6g:Dc (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3526 7n6g:De (3.6) BS01 GDP ? GO:0003924 ... P04690 35578022
    3527 7n6g:Dg (3.6) BS02 GDP ? GO:0003924 ... P04690 35578022
    3528 7ny8:A (1.8) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    3529 7ny8:B (1.8) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    3530 7o70:A (1.18) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 35471939
    3531 7o70:D (1.18) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 35471939
    3532 7o83:A (2.38) BS01 GDP N/A GO:0003924 ... N/A 35471939
    3533 7o83:B (2.38) BS01 GDP N/A GO:0003924 ... N/A 35471939
    3534 7o9k:C (3.1) BS02 GDP ? GO:0003924 ... Q9BT17 34135318
    3535 7o9k:t (3.1) BS02 GDP ? GO:0003723 ... P49411 34135318
    3536 7o9m:C (2.6) BS02 GDP ? GO:0003924 ... Q9BT17 34135318
    3537 7obr:x (2.8) BS03 GDP 3.6.5.4 GO:0003723 ... P61010 34260909
    3538 7odn:B (2.33) BS01 GDP ? GO:0000226 ... Q2T9S0 35408808
    3539 7odt:t (3.1) BS02 GDP ? GO:0000287 ... Q9H4K7 34135320
    3540 7ogn:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 35408808
    3541 7ogn:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 35408808
    3542 7ohh:A (1.45) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3543 7ohk:A (1.75) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3544 7ohl:A (1.75) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3545 7ohn:A (1.62) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3546 7oi2:A (1.9) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3547 7oja:A (2.22) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3548 7ojb:A (1.7) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3549 7ojc:A (1.95) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3550 7ojd:A (1.82) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3551 7ol3:A (1.9) BS01 GDP 3.6.5.- GO:0003924 ... Q8WXF7 34808209
    3552 7ol3:B (1.9) BS01 GDP 3.6.5.- GO:0003924 ... Q8WXF7 34808209
    3553 7old:C (3.0) BS03 GDP ? GO:0003746 ... G0S5T7 35079002
    3554 7on2:A (1.69) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3555 7on3:A (2.32) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3556 7on4:A (1.79) BS01 GDP ? GO:0003924 ... Q2FZ89 35312677
    3557 7oo7:A (1.48) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35471939
    3558 7oo7:D (1.48) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 35471939
    3559 7otc:w (2.9) BS03 GDP ? GO:0003746 ... A0A140N7C7 35500116
    3560 7pji:A (1.65) BS02 GDP 1.1.1.205 GO:0000166 ... A0A069Q6I8 35481629
    3561 7pji:B (1.65) BS02 GDP 1.1.1.205 GO:0000166 ... A0A069Q6I8 35481629
    3562 7pjv:x (3.1) BS03 GDP 3.6.5.- GO:0003746 ... P0A6M8 34635670
    3563 7pjw:x (4.0) BS03 GDP N/A GO:0003746 ... N/A 34635670
    3564 7pjx:x (6.5) BS03 GDP N/A GO:0003746 ... N/A 34635670
    3565 7pjy:x (3.1) BS05 GDP 3.6.5.- GO:0003746 ... P0A6M8 34635670
    3566 7pjz:x (6.0) BS04 GDP N/A GO:0003746 ... N/A 34635670
    3567 7pnx:X (2.76) BS03 GDP ? GO:0003723 ... P51398 35676484
    3568 7pny:X (3.06) BS03 GDP ? GO:0003723 ... P51398 35676484
    3569 7pnz:X (3.09) BS03 GDP ? GO:0003723 ... P51398 35676484
    3570 7po0:X (2.9) BS03 GDP ? GO:0003723 ... P51398 35676484
    3571 7po1:X (2.92) BS03 GDP ? GO:0003723 ... P51398 35676484
    3572 7po2:X (3.09) BS03 GDP ? GO:0003723 ... P51398 35676484
    3573 7po3:X (2.92) BS03 GDP ? GO:0003723 ... P51398 35676484
    3574 7pqc:A (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3575 7pqc:C (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3576 7pqc:E (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3577 7pqc:G (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3578 7pqc:I (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3579 7pqc:K (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3580 7pqc:M (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3581 7pqp:A (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3582 7pqp:C (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3583 7pqp:E (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3584 7pqp:G (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3585 7pqp:I (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3586 7pqp:K (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3587 7pqp:M (4.1) BS01 GDP ? GO:0000226 ... P02554 34963892
    3588 7pua:IA (3.6) BS03 GDP ? GO:0000166 ... C9ZSN7 35042777
    3589 7pub:Fg (3.7) BS02 GDP 2.3.1.39 GO:0004314 ... Q38DK4 35042777
    3590 7pub:IA (3.7) BS03 GDP ? GO:0000166 ... Q57WE3 35042777
    3591 7q1f:B (2.347) BS01 GDP N/A GO:0003924 ... N/A 35507869
    3592 7q1f:S (2.347) BS01 GDP N/A GO:0003924 ... N/A 35507869
    3593 7q9u:AAA (2.238) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 35104933
    3594 7q9u:BBB (2.238) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 35104933
    3595 7qi4:AX (2.21) BS03 GDP ? GO:0003723 ... P51398 38769321
    3596 7qi5:AX (2.63) BS03 GDP ? GO:0003723 ... P51398 38769321
    3597 7qi6:AX (2.98) BS03 GDP ? GO:0003723 ... P51398 38769321
    3598 7qsc:B (1.91) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 N/A
    3599 7qsc:D (1.91) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 N/A
    3600 7qtm:B (2.25) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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