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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 6ws4:D (1.84) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    3002 6wvl:B (3.2) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3003 6wvl:D (3.2) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3004 6wvm:B (3.3) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3005 6wvm:D (3.3) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3006 6wvr:B (2.9) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3007 6wvr:D (2.9) BS01 GDP ? GO:0000226 ... Q6B856 32636254
    3008 6wwe:B (3.9) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3009 6wwf:B (3.3) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3010 6wwg:B (2.9) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3011 6wwg:I (2.9) BS02 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3012 6wwh:B (3.8) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3013 6wwh:I (3.8) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3014 6wwi:B (3.6) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3015 6wwj:B (3.4) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3016 6wwk:B (3.0) BS02 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3017 6wwk:I (3.0) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3018 6wwl:B (3.1) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3019 6wwl:I (3.1) BS02 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3020 6wwm:B (2.8) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3021 6wwn:B (3.5) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3022 6wwo:B (2.8) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3023 6wwp:B (3.1) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3024 6wwq:B (3.0) BS02 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3025 6wwr:B (2.7) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3026 6wws:B (2.7) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3027 6wwt:B (3.2) BS02 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3028 6wwu:B (2.7) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3029 6wwv:B (3.1) BS01 GDP ? GO:0003924 ... A0A287AZ37 34131133
    3030 6x1c:B (2.9) BS01 GDP ? GO:0000226 ... P02554 34406768
    3031 6x1e:B (2.9) BS01 GDP ? GO:0000226 ... P02554 34406768
    3032 6x1f:B (2.7) BS01 GDP ? GO:0000226 ... P02554 34406768
    3033 6x5h:A (2.25) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438 MOAD: Ki=3.6uM
    3034 6x5h:B (2.25) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438 MOAD: Ki=3.6uM
    3035 6x5h:C (2.25) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438 MOAD: Ki=3.6uM
    3036 6x5r:A (2.4) BS02 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3037 6x5r:B (2.4) BS03 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3038 6x5s:A (3.3) BS02 GDP 2.4.1.68 N/A Q9BYC5 33004438
    3039 6x5s:B (3.3) BS01 GDP 2.4.1.68 N/A Q9BYC5 33004438
    3040 6x5t:A (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3041 6x5t:B (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3042 6x5t:C (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3043 6x5t:D (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3044 6x5t:E (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3045 6x5t:F (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3046 6x5t:G (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3047 6x5t:H (2.47) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3048 6x5u:A (3.2) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3049 6x5u:B (3.2) BS03 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3050 6x5u:C (3.2) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3051 6x5u:D (3.2) BS02 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3052 6x5u:E (3.2) BS02 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3053 6x5u:F (3.2) BS02 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3054 6x5u:G (3.2) BS02 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3055 6x5u:H (3.2) BS01 GDP 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    3056 6xaf:A (1.968) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0005525 ... Q5S007 N/A
    3057 6xaf:B (1.968) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0005525 ... Q5S007 N/A
    3058 6xer:B (2.5) BS01 GDP ? GO:0000226 ... P02554 34378386
    3059 6xes:B (2.32) BS01 GDP ? GO:0000226 ... P02554 34378386
    3060 6xet:B (2.6) BS01 GDP ? GO:0000226 ... P02554 34378386
    3061 6xjn:A (2.2) BS01 GDP 3.6.5.- GO:0003924 ... Q8WXF7 34546351
    3062 6xjo:A (2.1) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 34546351
    3063 6xjo:B (2.1) BS01 GDP 3.6.5.- GO:0003924 ... Q6DD88 34546351
    3064 6xps:A (1.644) BS01 GDP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    3065 6xps:B (1.644) BS01 GDP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    3066 6xps:C (1.644) BS01 GDP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    3067 6xrs:A (2.8) BS01 GDP ? GO:0000027 ... B4RKD2 N/A
    3068 6xrs:B (2.8) BS01 GDP ? GO:0000027 ... B4RKD2 N/A
    3069 6xrs:B (2.8) BS02 GDP ? GO:0000027 ... B4RKD2 N/A
    3070 6xrs:C (2.8) BS01 GDP ? GO:0000027 ... B4RKD2 N/A
    3071 6xrs:C (2.8) BS02 GDP ? GO:0000027 ... B4RKD2 N/A
    3072 6xrs:D (2.8) BS01 GDP ? GO:0000027 ... B4RKD2 N/A
    3073 6xrs:D (2.8) BS02 GDP ? GO:0000027 ... B4RKD2 N/A
    3074 6y1u:A (1.68) BS01 GDP ? GO:0003924 ... P9WN95 34023403
    3075 6y4m:B (3.34) BS01 GDP ? GO:0000226 ... P02554 33544599
    3076 6y4n:B (2.852) BS01 GDP ? GO:0000226 ... P02554 33544599
    3077 6y6d:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 32657585
    3078 6y6d:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 32657585
    3079 6y7g:A (2.3) BS01 GDP ? GO:0003924 ... Q96E17 N/A
    3080 6y7g:B (2.3) BS01 GDP ? GO:0003924 ... Q96E17 N/A
    3081 6yd1:A (1.7) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    3082 6yd5:A (1.55) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    3083 6yd6:A (1.7) BS01 GDP ? GO:0003924 ... Q2FZ89 33908781
    3084 6ym1:A (1.7) BS01 GDP ? GO:0003924 ... P9WN95 34023403
    3085 6ypk:A (1.79) BS01 GDP 2.7.11.1 GO:0004672 ... P68400 33119282
    3086 6yr8:A (1.9) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    3087 6yv8:A (2.6) BS01 GDP ? GO:0016740 ... A3MTD6 32569746
    3088 6yv8:B (2.6) BS01 GDP ? GO:0016740 ... A3MTD6 32569746
    3089 6yxw:A (2.06) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    3090 6yxw:C (2.06) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34193876
    3091 6z3e:A (2.80039) BS01 GDP ? GO:0005515 ... Q96F15 N/A
    3092 6zay:A (2.4) BS02 GDP ? GO:0003924 ... Q9H082 32960676
    3093 6zay:B (2.4) BS02 GDP ? GO:0003924 ... Q9H082 32960676
    3094 6zhm:A (2.15) BS01 GDP 3.6.1.- GO:0003924 ... Q9KX08 34749534
    3095 6zio:A (1.55) BS01 GDP 3.6.5.2 GO:0000139 ... P01111 32779487
    3096 6zio:B (1.55) BS02 GDP 3.6.5.2 GO:0000139 ... P01111 32779487
    3097 6zir:A (1.9) BS01 GDP 3.6.5.2 GO:0000139 ... P01111 32779487
    3098 6zl3:A (2.031) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 32779487
    3099 6zl5:A (1.645) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32779487
    3100 6zpi:B (4.5) BS01 GDP ? GO:0000226 ... P02554 33252036
    3101 6zwb:B (1.747) BS01 GDP ? GO:0000226 ... Q6B856 33275880
    3102 6zwc:B (2.04) BS01 GDP ? GO:0000226 ... Q6B856 33275880
    3103 6zxq:A (1.4) BS02 GDP 6.3.4.4 GO:0000166 ... P56137 N/A
    3104 7a1w:A (1.76) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3105 7a1x:A (1.32) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3106 7a1y:A (2.004) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3107 7a47:A (2.16) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3108 7a47:C (2.16) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3109 7a47:E (2.16) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 34558391
    3110 7a5f:X6 (4.4) BS02 GDP ? GO:0003723 ... P51398 33243891
    3111 7a5g:X6 (4.33) BS02 GDP ? GO:0003723 ... P51398 33243891
    3112 7a5i:X6 (3.7) BS02 GDP ? GO:0003723 ... P51398 33243891
    3113 7a5k:X6 (3.7) BS02 GDP ? GO:0003723 ... P51398 33243891
    3114 7abz:6 (3.21) BS04 GDP ? GO:0003723 ... P0CE48 34389707
    3115 7ac5:B (2.26) BS01 GDP ? GO:0000226 ... Q6B856 34473086
    3116 7acq:A (1.86) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    3117 7acq:B (1.86) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    3118 7acq:C (1.86) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    3119 7alr:B (1.93) BS02 GDP ? GO:0000226 ... Q2T9S0 33619102
    3120 7an4:A (2.6) BS01 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3121 7an4:A (2.6) BS02 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3122 7an4:B (2.6) BS01 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3123 7an4:B (2.6) BS02 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3124 7an4:D (2.6) BS01 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3125 7an4:D (2.6) BS02 GDP 5.1.3.13 GO:0005829 ... Q0P8I4 N/A
    3126 7anj:A (2.35) BS02 GDP 5.1.3.13 GO:0005829 ... Q6EF58 N/A
    3127 7anj:B (2.35) BS02 GDP 5.1.3.13 GO:0005829 ... Q6EF58 N/A
    3128 7as4:1 (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3129 7as4:2 (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3130 7as4:O (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3131 7as4:P (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3132 7as4:Q (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3133 7as4:R (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3134 7as4:S (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3135 7as4:T (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3136 7as4:U (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3137 7as4:V (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3138 7as4:W (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3139 7as4:X (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3140 7as4:Y (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3141 7as4:Z (4.13) BS01 GDP ? GO:0000070 ... P23258 33355144
    3142 7au5:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 34159741
    3143 7au5:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 34159741
    3144 7bbn:A (1.68) BS01 GDP N/A GO:0003746 ... N/A N/A
    3145 7bbn:B (1.68) BS01 GDP N/A GO:0003746 ... N/A N/A
    3146 7bl5:9 (3.3) BS02 GDP 3.6.5.- GO:0000027 ... P42641 33639093
    3147 7bop:A (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3148 7bop:B (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3149 7bop:C (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3150 7bop:D (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3151 7bop:E (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3152 7bop:F (1.9) BS02 GDP ? GO:0000030 ... B0Y2F5 32873705
    3153 7bta:A (2.6) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3154 7bta:B (2.6) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3155 7btc:A (2.101) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3156 7btc:B (2.101) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3157 7btc:C (2.101) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3158 7btc:D (2.101) BS01 GDP 3.6.5.- GO:0000139 ... Q15382 32470140
    3159 7bvu:A (2.5) BS01 GDP ? GO:0005525 ... Q5M586 N/A
    3160 7bvu:B (2.5) BS01 GDP ? GO:0005525 ... Q5M586 N/A
    3161 7bwt:B (2.3) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 33603205
    3162 7bwv:A (2.35) BS01 GDP ? GO:0005525 ... Q5M586 N/A
    3163 7bwv:B (2.35) BS01 GDP ? GO:0005525 ... Q5M586 N/A
    3164 7c1o:A (2.18) BS02 GDP ? GO:0000028 ... O67800 N/A
    3165 7c3k:A (2.6) BS01 GDP 3.6.5.- GO:0003925 ... Q0GUM3 33469160
    3166 7c3k:B (2.6) BS01 GDP 3.6.5.- GO:0003925 ... Q0GUM3 33469160
    3167 7c40:A (2.516) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32486141
    3168 7c41:A (2.276) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 32486141
    3169 7c41:G (2.276) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32486141
    3170 7c41:J (2.276) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32486141
    3171 7c41:M (2.276) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32486141
    3172 7cbz:B (2.61) BS02 GDP ? GO:0000226 ... P02554 34081857
    3173 7cbz:D (2.61) BS03 GDP ? GO:0000226 ... P02554 34081857
    3174 7cda:B (2.659) BS01 GDP ? GO:0000226 ... P02554 35762925
    3175 7cdw:A (3.0) BS01 GDP ? GO:0003746 ... P9WNM7 34540889
    3176 7cdw:A (3.0) BS02 GDP ? GO:0003746 ... P9WNM7 34540889
    3177 7cdw:B (3.0) BS01 GDP ? GO:0003746 ... P9WNM7 34540889
    3178 7ce6:B (2.695) BS01 GDP ? GO:0000226 ... P02554 35762925
    3179 7ce8:B (2.725) BS01 GDP ? GO:0000226 ... P02554 35762925
    3180 7cek:B (2.696) BS01 GDP ? GO:0000226 ... P02554 35762925
    3181 7ckf:A (2.284) BS02 GDP 3.6.5.- GO:0003924 ... Q96PP8 33876762
    3182 7ckf:B (2.284) BS02 GDP 3.6.5.- GO:0003924 ... Q96PP8 33876762
    3183 7cld:B (2.611) BS01 GDP ? GO:0000226 ... P02554 34138737
    3184 7cnm:B (2.44) BS01 GDP ? GO:0000226 ... P02554 33220079
    3185 7cnm:D (2.44) BS01 GDP ? GO:0000226 ... P02554 33220079
    3186 7cnn:B (2.5) BS01 GDP ? GO:0000226 ... P02554 33220079
    3187 7cno:B (2.5) BS01 GDP ? GO:0000226 ... P02554 33220079
    3188 7cno:D (2.5) BS01 GDP ? GO:0000226 ... P02554 33220079
    3189 7cpd:B (2.506) BS03 GDP ? GO:0000226 ... Q6B856 N/A
    3190 7cpd:D (2.506) BS02 GDP ? GO:0000226 ... Q6B856 N/A
    3191 7cpq:B (2.595) BS02 GDP ? GO:0000226 ... Q6B856 N/A
    3192 7cpq:D (2.595) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    3193 7cyq:A (2.83) BS05 GDP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33232691
    3194 7dad:B (2.85) BS01 GDP ? GO:0000226 ... P02554 33272565
    3195 7dae:B (2.394) BS01 GDP ? GO:0000226 ... P02554 33272565
    3196 7dae:D (2.394) BS01 GDP ? GO:0000226 ... P02554 33272565
    3197 7daf:B (2.4) BS01 GDP ? GO:0000226 ... P02554 33272565
    3198 7daf:D (2.4) BS01 GDP ? GO:0000226 ... P02554 33272565
    3199 7db9:B (2.845) BS01 GDP ? GO:0000226 ... P02554 N/A
    3200 7db9:D (2.845) BS01 GDP ? GO:0000226 ... P02554 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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