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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 6pgp:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31820981
    2602 6pq3:A (1.75) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32393580
    2603 6pta:A (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    2604 6pta:B (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    2605 6pta:C (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    2606 6pta:D (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    2607 6qqn:B (2.301) BS01 GDP ? GO:0000226 ... Q6B856 31302152
    2608 6qqn:D (2.301) BS01 GDP ? GO:0000226 ... Q6B856 31302152
    2609 6qtn:B (1.9) BS01 GDP ? GO:0000226 ... Q6B856 30897704
    2610 6qtn:D (1.9) BS01 GDP ? GO:0000226 ... Q6B856 30897704
    2611 6qus:S (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    2612 6qus:U (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    2613 6quy:G (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    2614 6quy:H (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    2615 6qve:G (3.7) BS02 GDP ? GO:0000226 ... P07437 31748546
    2616 6qve:H (3.7) BS01 GDP ? GO:0000226 ... P07437 31748546
    2617 6qvj:S (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    2618 6qvj:U (3.8) BS01 GDP ? GO:0000226 ... P07437 31748546
    2619 6r3v:B (1.75) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 31038818
    2620 6ra9:A (2.7) BS01 GDP ? GO:0003746 ... Q71V39 32875694
    2621 6ra9:B (2.7) BS02 GDP ? GO:0003746 ... Q71V39 32875694
    2622 6rev:B (3.8) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2623 6rev:b (3.8) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2624 6rf2:B (4.2) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2625 6rf2:b (4.2) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2626 6rf8:B (3.8) BS01 GDP ? GO:0000226 ... Q6B856 31610239
    2627 6rf8:b (3.8) BS01 GDP ? GO:0000226 ... Q6B856 31610239
    2628 6rfd:B (3.9) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2629 6rfd:b (3.9) BS01 GDP ? GO:0000226 ... Q6B856 33051979
    2630 6rpu:A (2.11) BS02 GDP 1.1.1.205 GO:0000166 ... Q756Z6 31416831
    2631 6rvn:A (1.242) BS01 GDP ? GO:0003924 ... P0A031 31997533 MOAD: Kd=18.2nM
    2632 6rvp:A (1.16) BS01 GDP ? GO:0003924 ... P0A031 31997533
    2633 6rvq:A (1.136) BS01 GDP ? GO:0003924 ... P0A031 31997533
    2634 6rza:B (4.5) BS01 GDP ? GO:0000226 ... P02554 31264960
    2635 6rza:D (4.5) BS01 GDP ? GO:0000226 ... P02554 31264960
    2636 6rzb:B (4.1) BS01 GDP ? GO:0000226 ... P02554 31264960
    2637 6s6a:C (2.63) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2638 6s6a:D (2.63) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2639 6s6d:C (2.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2640 6s6d:D (2.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2641 6s8k:B (1.52) BS02 GDP ? GO:0000226 ... Q6B856 N/A
    2642 6s8l:B (1.801) BS02 GDP ? GO:0000226 ... Q13509 N/A
    2643 6s8m:B (4.5) BS01 GDP ? GO:0000022 ... P05219 30659798
    2644 6s9e:B (2.25) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    2645 6s9e:D (2.25) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    2646 6sb0:D (5.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2647 6sb0:J (5.5) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2648 6sb2:D (6.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2649 6sb2:J (6.2) BS01 GDP 3.6.5.- GO:0000287 ... Q9HB90 31601764
    2650 6ses:B (2.0) BS01 GDP ? GO:0000226 ... Q6B856 32591477
    2651 6ses:D (2.0) BS01 GDP ? GO:0000226 ... Q6B856 32591477
    2652 6si9:A (1.9) BS01 GDP ? GO:0003924 ... P0A031 31997533 MOAD: Kd=18.2nM
    2653 6siu:C (2.49) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 32632184
    2654 6siu:D (2.49) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 32632184
    2655 6sku:B (3.2) BS01 GDP 3.6.5.2 GO:0003924 ... Q9H0U4 32440549
    2656 6stf:A (2.4) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2657 6stf:B (2.4) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2658 6stf:C (2.4) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2659 6stf:C (2.4) BS02 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2660 6stf:D (2.4) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2661 6stf:E (2.4) BS01 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2662 6stf:E (2.4) BS02 GDP 3.6.5.2 GO:0003924 ... P61006 32227113
    2663 6t5b:A (1.37) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32023060
    2664 6t5u:A (1.72) BS01 GDP 3.6.5.2 GO:0003924 ... A0A1S2ZE25 32023060
    2665 6t5u:B (1.72) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32023060
    2666 6t5v:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32023060
    2667 6t66:A (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2668 6t66:B (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2669 6t66:B (3.9) BS03 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2670 6t66:C (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2671 6t66:C (3.9) BS03 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2672 6t66:D (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2673 6t66:D (3.9) BS03 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2674 6t66:E (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2675 6t66:F (3.9) BS01 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2676 6t66:F (3.9) BS02 GDP 3.6.4.12 GO:0003677 ... Q9KUY7 34107018
    2677 6tam:A (1.64) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32237114
    2678 6tan:A (1.16) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32237114
    2679 6tde:B (2.286) BS01 GDP ? GO:0000226 ... D0VWY9 32827941
    2680 6tde:D (2.286) BS01 GDP ? GO:0000226 ... D0VWY9 32827941
    2681 6th4:B (2.121) BS01 GDP N/A GO:0003924 ... N/A N/A
    2682 6th4:D (2.121) BS01 GDP N/A GO:0003924 ... N/A N/A
    2683 6tis:B (2.3) BS01 GDP ? GO:0000226 ... Q24560 33544140
    2684 6tis:D (2.3) BS01 GDP ? GO:0000226 ... Q24560 33544140
    2685 6tiu:B (3.571) BS02 GDP ? GO:0000226 ... Q24560 33544140
    2686 6tiz:B (2.197) BS01 GDP ? GO:0000226 ... Q24560 33544140
    2687 6tiz:D (2.197) BS01 GDP ? GO:0000226 ... Q24560 33544140
    2688 6tkv:A (1.95) BS01 GDP 2.4.1.68 N/A Q9BYC5 32080177
    2689 6tkv:B (1.95) BS01 GDP 2.4.1.68 N/A Q9BYC5 32080177
    2690 6tkz:C (2.64) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    2691 6tkz:D (2.64) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    2692 6tzm:A (1.714) BS01 GDP 6.5.1.3 GO:0003972 ... P43075 31722405
    2693 6u05:A (1.948) BS01 GDP 6.5.1.3 GO:0003972 ... P43075 31722405
    2694 6u0h:B (4.3) BS01 GDP ? GO:0000226 ... P41352 31527277
    2695 6u0t:B (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2696 6u0t:I (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2697 6u0t:J (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2698 6u0t:K (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2699 6u0t:L (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2700 6u0t:M (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2701 6u0u:B (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2702 6u0u:F (4.16) BS02 GDP 3.6.5.- GO:0000226 ... P41351 31527277
    2703 6u0u:I (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2704 6u0u:J (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2705 6u0u:K (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2706 6u0u:L (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2707 6u0u:M (4.16) BS01 GDP ? GO:0000226 ... P41352 31527277
    2708 6u42:0A (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    2709 6u42:0C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2710 6u42:0E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2711 6u42:0G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2712 6u42:0I (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    2713 6u42:0K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2714 6u42:0M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2715 6u42:0O (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    2716 6u42:0Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2717 6u42:0S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2718 6u42:0U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2719 6u42:0W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2720 6u42:0Y (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2721 6u42:1A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2722 6u42:1C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2723 6u42:1E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2724 6u42:1G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2725 6u42:1K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2726 6u42:1M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2727 6u42:1O (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2728 6u42:1Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2729 6u42:1S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2730 6u42:1U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2731 6u42:1W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2732 6u42:2A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2733 6u42:2C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2734 6u42:2E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2735 6u42:2G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2736 6u42:2I (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2737 6u42:2K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2738 6u42:2M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2739 6u42:2Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2740 6u42:2S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2741 6u42:2U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2742 6u42:2W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2743 6u42:2Y (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2744 6u42:3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2745 6u42:3A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2746 6u42:3C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2747 6u42:3G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2748 6u42:3I (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2749 6u42:3K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2750 6u42:3M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2751 6u42:3O (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2752 6u42:3Q (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    2753 6u42:3S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2754 6u42:5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2755 6u42:7 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2756 6u42:9 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2757 6u42:A1 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2758 6u42:A3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2759 6u42:A5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2760 6u42:A7 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2761 6u42:A9 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    2762 6u42:B1 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2763 6u42:B3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2764 6u42:B5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2765 6u42:B8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2766 6u42:C0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2767 6u42:C2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2768 6u42:C4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2769 6u42:C6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2770 6u42:C8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2771 6u42:D0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2772 6u42:D2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2773 6u42:D4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2774 6u42:D6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2775 6u42:D8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2776 6u42:E0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2777 6u42:E2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2778 6u42:E4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2779 6u42:E6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2780 6u42:E8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2781 6u42:F0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2782 6u42:F2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2783 6u42:F6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2784 6u42:F8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2785 6u42:G0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2786 6u42:G2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2787 6u42:G4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2788 6u42:G6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2789 6u42:G8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2790 6u42:H2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2791 6u42:H4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2792 6u42:H6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2793 6u42:H8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2794 6u42:I0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2795 6u42:I2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2796 6u42:I4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2797 6u42:I8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2798 6u42:J0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2799 6u42:J2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    2800 6u42:J4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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