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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6479 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 6eg8:L (2.8) BS01 GDP ? GO:0002862 ... P63092 31080070
    2202 6ekk:C (1.82) BS01 GDP ? GO:0003924 ... Q15286 N/A
    2203 6ekk:D (1.82) BS01 GDP ? GO:0003924 ... Q15286 N/A
    2204 6evx:B (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2205 6evx:D (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2206 6evx:F (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2207 6evx:G (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2208 6evx:H (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2209 6evx:I (4.2) BS01 GDP ? GO:0000226 ... P02554 29967541
    2210 6evz:B (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2211 6evz:D (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2212 6evz:F (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2213 6evz:G (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2214 6evz:H (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2215 6evz:I (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2216 6ew0:B (3.8) BS02 GDP ? GO:0000226 ... P02554 29967541
    2217 6ew0:D (3.8) BS02 GDP ? GO:0000226 ... P02554 29967541
    2218 6ew0:F (3.8) BS01 GDP ? GO:0000226 ... P02554 29967541
    2219 6ew0:G (3.8) BS02 GDP ? GO:0000226 ... P02554 29967541
    2220 6ew0:H (3.8) BS02 GDP ? GO:0000226 ... P02554 29967541
    2221 6ew0:I (3.8) BS02 GDP ? GO:0000226 ... P02554 29967541
    2222 6f7c:B (2.002) BS01 GDP ? GO:0000226 ... Q6B856 31655259
    2223 6f7c:D (2.002) BS01 GDP ? GO:0000226 ... Q6B856 31655259
    2224 6fii:B (2.405) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2225 6fii:D (2.405) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2226 6fjf:B (2.402) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2227 6fjf:D (2.402) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2228 6fjm:B (2.1) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2229 6fjm:D (2.1) BS01 GDP ? GO:0000226 ... Q6B856 29844393
    2230 6fkj:B (2.148) BS02 GDP ? GO:0000226 ... Q6B856 29523799
    2231 6fkj:D (2.148) BS02 GDP ? GO:0000226 ... Q6B856 29523799
    2232 6fkl:B (2.098) BS01 GDP ? GO:0000226 ... Q6B856 29523799
    2233 6fkl:D (2.098) BS01 GDP ? GO:0000226 ... Q6B856 29523799
    2234 6fqd:A (2.10001) BS01 GDP 3.6.5.4 GO:0005525 ... P10121 29704493
    2235 6fqd:B (2.10001) BS01 GDP 3.6.5.4 GO:0005525 ... P10121 29704493
    2236 6g0z:A (2.15) BS01 GDP ? GO:0003924 ... A0A0H2XK72 30366986 MOAD: Kd=4.84uM
    PDBbind: -logKd/Ki=5.32, Kd=4.84uM
    2237 6g0z:B (2.15) BS01 GDP ? GO:0003924 ... A0A0H2XK72 30366986 MOAD: Kd=4.84uM
    2238 6gf3:B (2.4) BS01 GDP ? GO:0000226 ... Q6B856 30006510
    2239 6gf3:D (2.4) BS01 GDP ? GO:0000226 ... Q6B856 30006510
    2240 6gfu:A (2.0) BS01 GDP N/A GO:0003746 ... N/A N/A
    2241 6gj4:B (2.4) BS01 GDP ? GO:0000226 ... Q6B856 30448418
    2242 6gj4:D (2.4) BS01 GDP ? GO:0000226 ... Q6B856 30448418
    2243 6gqb:AZ (3.9) BS04 GDP 3.6.5.- GO:0003746 ... P32324 29886014
    2244 6gvm:B (3.5) BS01 GDP ? GO:0000226 ... D0VWY9 31036638
    2245 6gwd:B (3.2) BS01 GDP ? GO:0000226 ... D0VWY9 30661854
    2246 6gwd:D (3.2) BS01 GDP ? GO:0000226 ... D0VWY9 30661854
    2247 6gwd:F (3.2) BS01 GDP ? GO:0000226 ... D0VWY9 30661854
    2248 6gze:B (2.49) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    2249 6gze:D (2.49) BS01 GDP ? GO:0000226 ... Q6B856 32151315
    2250 6h35:A (2.3) BS01 GDP ? GO:0003924 ... Q1DB04 31757955
    2251 6h35:B (2.3) BS01 GDP ? GO:0003924 ... Q1DB04 31757955
    2252 6h46:A (2.22) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31197133
    2253 6h4d:A (2.9) BS02 GDP 3.6.1.- GO:0003924 ... Q9HUL3 31199072 PDBbind: -logKd/Ki=7.96, Kd=0.011uM
    2254 6h9b:B (2.75) BS01 GDP ? GO:0000226 ... D0VWY9 30525602
    2255 6h9b:D (2.75) BS01 GDP ? GO:0000226 ... D0VWY9 30525602
    2256 6hh2:A (1.449) BS01 GDP ? GO:0003924 ... O14966 31552791 MOAD: Kd=2.7uM
    2257 6hjh:A (3.3) BS01 GDP ? GO:0003924 ... Q1DB04 31757955
    2258 6hjo:A (1.98) BS01 GDP ? GO:0003924 ... Q1DB04 31757955
    2259 6hjo:B (1.98) BS01 GDP ? GO:0003924 ... Q1DB04 31757955
    2260 6htw:B (1.8) BS01 GDP N/A GO:0003746 ... N/A N/A
    2261 6htw:H (1.8) BS01 GDP N/A GO:0003746 ... N/A N/A
    2262 6hx8:B (2.402) BS01 GDP ? GO:0000226 ... Q6B856 30775645
    2263 6hx8:D (2.402) BS01 GDP ? GO:0000226 ... Q6B856 30775645
    2264 6hz4:D (3.6) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2265 6hz4:E (3.6) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2266 6hz4:F (3.6) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2267 6hz5:D (4.2) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2268 6hz5:E (4.2) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2269 6hz5:F (4.2) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2270 6hz5:F (4.2) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2271 6hz5:J (4.2) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2272 6hz5:K (4.2) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2273 6hz5:L (4.2) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2274 6hz5:L (4.2) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2275 6hz6:D (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2276 6hz6:E (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2277 6hz6:F (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2278 6hz6:J (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2279 6hz6:K (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2280 6hz6:L (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2281 6hz7:D (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2282 6hz7:E (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2283 6hz7:F (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2284 6hz7:J (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2285 6hz7:K (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2286 6hz7:L (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2287 6hz8:D (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2288 6hz8:E (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2289 6hz8:F (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2290 6hz8:J (4.3) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2291 6hz8:K (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2292 6hz8:L (4.3) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2293 6hz9:D (4.8) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2294 6hz9:E (4.8) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2295 6hz9:F (4.8) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2296 6hz9:J (4.8) BS02 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2297 6hz9:K (4.8) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2298 6hz9:L (4.8) BS01 GDP 3.1.21.- GO:0005524 ... P15005 31296862
    2299 6i0m:A (2.567) BS02 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2300 6i0m:A (2.567) BS03 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2301 6i0m:A (2.567) BS04 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2302 6i0m:B (2.567) BS02 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2303 6i0m:B (2.567) BS03 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2304 6i0m:B (2.567) BS04 GDP 1.1.1.205 GO:0000166 ... P12268 30664871
    2305 6i5c:B (2.95) BS01 GDP ? GO:0000226 ... Q6B856 31098019
    2306 6i5c:D (2.95) BS01 GDP ? GO:0000226 ... Q6B856 31098019
    2307 6i5m:A (2.4) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 30988256
    2308 6i8r:A (2.0) BS01 GDP N/A GO:0003746 ... N/A N/A
    2309 6iy1:A (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2310 6iy1:B (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2311 6iy1:C (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2312 6iy1:D (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2313 6iy1:E (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2314 6iy1:F (2.11) BS01 GDP 3.6.5.2 GO:0003924 ... P62491 N/A
    2315 6jcj:B (2.5) BS01 GDP ? GO:0000226 ... Q6B856 30803758
    2316 6jfk:A (1.997) BS01 GDP 3.6.5.- GO:0003924 ... O95140 31664033 PDBbind: -logKd/Ki=4.84, Kd=14.4uM
    2317 6jsj:A (3.2) BS01 GDP 3.6.5.5 GO:0003924 ... P32266 32041880
    2318 6jsj:B (3.2) BS01 GDP 3.6.5.5 GO:0003924 ... P32266 32041880
    2319 6jsj:C (3.2) BS01 GDP 3.6.5.5 GO:0003924 ... P32266 32041880
    2320 6jtg:A (2.4) BS01 GDP 3.6.5.5 GO:0003924 ... O60313 32379273
    2321 6k9v:B (2.543) BS01 GDP ? GO:0000226 ... Q6B856 31369682
    2322 6knz:B (2.475) BS01 GDP ? GO:0000226 ... Q6B856 31628188
    2323 6kpp:B (2.74524) BS02 GDP ? GO:0000226 ... P02554 32085900
    2324 6kpp:D (2.74524) BS03 GDP ? GO:0000226 ... P02554 32085900
    2325 6kvp:A (1.4) BS01 GDP ? GO:0003924 ... Q6GHP9 31882782
    2326 6kvq:A (1.6) BS01 GDP ? GO:0003924 ... Q6GHP9 31882782
    2327 6kx2:A (1.454) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 32714746
    2328 6kx3:A (1.981) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 32714746
    2329 6kzb:A (3.55) BS01 GDP 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44    		 GO:0000785 ... P21980 31991788
    2330 6kzb:B (3.55) BS01 GDP 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44    		 GO:0000785 ... P21980 31991788
    2331 6kzb:C (3.55) BS01 GDP 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44    		 GO:0000785 ... P21980 31991788
    2332 6l6o:A (1.8) BS01 GDP ? GO:0003924 ... A0A109NYM0 33135673
    2333 6ll5:A (1.75) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 32039890
    2334 6ll6:A (2.5) BS01 GDP ? GO:0003924 ... P0A9A6 32039890
    2335 6loj:B (3.72) BS01 GDP 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 33303953
    2336 6ls4:B (2.4) BS01 GDP ? GO:0000226 ... P02554 32931884
    2337 6lsm:B (2.751) BS01 GDP ? GO:0000226 ... P02554 N/A
    2338 6lsm:D (2.751) BS01 GDP ? GO:0000226 ... P02554 N/A
    2339 6lsn:B (2.445) BS01 GDP ? GO:0000226 ... P02554 N/A
    2340 6lsn:D (2.445) BS01 GDP ? GO:0000226 ... P02554 N/A
    2341 6m65:A (1.44) BS01 GDP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    2342 6m69:A (1.5) BS01 GDP 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    2343 6m9w:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31324887
    2344 6mbt:A (1.45) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31324887
    2345 6mbt:B (1.45) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31324887
    2346 6mbu:A (1.45) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31324887
    2347 6mbu:B (1.45) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31324887
    2348 6mhe:A (2.2) BS02 GDP ? GO:0000139 ... P08753 31363053
    2349 6mhf:A (2.0) BS02 GDP ? GO:0000139 ... P08753 31363053
    2350 6mij:A (1.955) BS01 GDP ? GO:0003746 ... D0C9P9
    D0CG85    		 N/A
    2351 6mlq:B (4.2) BS01 GDP ? GO:0000226 ... P02554 31031197
    2352 6mlr:B (4.2) BS01 GDP ? GO:0000226 ... P02554 31031197
    2353 6mqg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31341022
    2354 6mqk:A (2.19) BS01 GDP ? GO:0005525 ... Q8IYM1 32431830
    2355 6mqk:A (2.19) BS03 GDP ? GO:0005525 ... Q8IYM1 32431830
    2356 6mqk:B (2.19) BS01 GDP ? GO:0005525 ... Q8IYM1 32431830
    2357 6mqk:C (2.19) BS01 GDP ? GO:0005525 ... Q8IYM1 32431830
    2358 6mqk:D (2.19) BS01 GDP ? GO:0005525 ... Q8IYM1 32431830
    2359 6mqk:D (2.19) BS02 GDP ? GO:0005525 ... Q8IYM1 32431830
    2360 6mql:A (2.17) BS01 GDP ? GO:0005525 ... Q8IYM1 N/A
    2361 6mqn:A (1.6) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31341022
    2362 6mqn:B (1.6) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31341022
    2363 6mqn:C (1.6) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 31341022
    2364 6mqt:A (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2365 6mqt:B (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2366 6mqt:C (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2367 6mqt:D (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2368 6mqt:E (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2369 6mqt:F (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2370 6mqt:G (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2371 6mqt:H (1.498) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 N/A
    2372 6ms9:A (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    2373 6ms9:B (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    2374 6ms9:C (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    2375 6mtd:v (3.3) BS04 GDP N/A GO:0003924 ... N/A 30355441
    2376 6mte:v (3.4) BS03 GDP N/A GO:0003924 ... N/A 30355441
    2377 6mze:B (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2378 6mze:D (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2379 6mze:I (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2380 6mze:K (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2381 6mze:P (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2382 6mze:R (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2383 6mze:W (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2384 6mze:Y (3.6) BS01 GDP ? GO:0000226 ... P02554 30422110
    2385 6mzf:B (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2386 6mzf:D (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2387 6mzf:I (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2388 6mzf:K (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2389 6mzf:P (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2390 6mzf:R (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2391 6mzf:W (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2392 6mzf:Y (4.4) BS01 GDP ? GO:0000226 ... P02554 30422110
    2393 6mzg:B (3.208) BS01 GDP ? GO:0000226 ... P02554 30422110
    2394 6mzg:D (3.208) BS01 GDP ? GO:0000226 ... P02554 30422110
    2395 6mzg:H (3.208) BS01 GDP ? GO:0000226 ... P02554 30422110
    2396 6mzg:J (3.208) BS01 GDP ? GO:0000226 ... P02554 30422110
    2397 6n0b:A (1.739) BS01 GDP ? GO:0005525 ... Q16181 31009756
    2398 6n0b:A (1.739) BS02 GDP ? GO:0005525 ... Q16181 31009756
    2399 6n0b:B (1.739) BS01 GDP ? GO:0005525 ... Q16181 31009756
    2400 6n0b:B (1.739) BS02 GDP ? GO:0005525 ... Q16181 31009756
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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