Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bgg:B (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    2 1bgg:C (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    3 1bgg:D (2.3) BS01 GCO 3.2.1.21 GO:0004553 ... P22073 9466926
    4 1xlf:A (2.5) BS01 GCO 5.3.1.5 GO:0000287 ... P12070 2319597
    5 1xlf:B (2.5) BS01 GCO 5.3.1.5 GO:0000287 ... P12070 2319597
    6 3o03:A (1.9) BS03 GCO N/A GO:0016491 ... N/A 19177572
    7 3oy8:A (2.19) BS01 GCO ? GO:0002317 ... P09382 20826047 PDBbind: -logKd/Ki=3.66, Kd=220uM
    8 3oy8:B (2.19) BS01 GCO ? GO:0002317 ... P09382 20826047
    9 3qke:A (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    10 3qke:B (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    11 3qke:C (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    12 3qke:D (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    13 3qke:E (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    14 3qke:F (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    15 3qke:G (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    16 3qke:H (1.55) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    17 3t6c:A (1.598) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... D4GJ14 N/A
    18 3t6c:B (1.598) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... D4GJ14 N/A
    19 3twb:A (1.76) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    20 3twb:A (1.76) BS03 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    21 3twb:B (1.76) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    22 3twb:C (1.76) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    23 3twb:D (1.76) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    24 3twb:E (1.76) BS02 GCO 4.2.1.-
    4.2.1.39    		 GO:0000287 ... B5R541 N/A
    25 4k2s:A (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    26 4k2s:B (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    27 4k2s:C (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    28 4k2s:D (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    29 4k2s:E (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    30 4k2s:F (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    31 4k2s:G (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    32 4k2s:H (1.699) BS01 GCO 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    33 4zlg:A (1.75) BS01 GCO 2.4.1.321 GO:0003824 ... Q21MB1 26041776
    34 6e9n:A (2.915) BS01 GCO ? GO:0005886 ... J7QAK3 31083648
    35 7bcp:A (2.0) BS01 GCO ? GO:0030288 ... R4JTF7 33630388
    36 8htt:B (3.6) BS01 GCO ? GO:0006091 ... Q8NBN3 38992057
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218