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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2v0n:A (2.71) BS05 GAV 2.7.7.65 GO:0000160 ... B8GZM2 17697997
    2 2v0n:A (2.71) BS09 GAV 2.7.7.65 GO:0000160 ... B8GZM2 17697997
    3 2v0n:B (2.71) BS06 GAV 2.7.7.65 GO:0000160 ... B8GZM2 17697997
    4 4h54:A (3.9) BS02 GAV 2.7.7.65 GO:0005515 ... P31129 23769666
    5 4h54:A (3.9) BS04 GAV 2.7.7.65 GO:0005515 ... P31129 23769666
    6 4h54:B (3.9) BS01 GAV 2.7.7.65 GO:0005515 ... P31129 23769666
    7 4h54:B (3.9) BS03 GAV 2.7.7.65 GO:0005515 ... P31129 23769666
    8 4h54:B (3.9) BS05 GAV 2.7.7.65 GO:0005515 ... P31129 23769666
    9 4isz:A (2.303) BS04 GAV 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 23560983
    10 4isz:B (2.303) BS02 GAV 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 23560983
    11 4zvf:A (1.15) BS01 GAV 2.7.7.65 N/A P0AA89 26527135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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